Author details

Full Name

Bogdan Budnik

Affiliation

ORCID

Career Start Year

2000

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36922599	A swapped genetic code prevents viral infections and gene transfer.		2023
37609073	Brain cell type specific proteomics approach to discover pathological mechanisms in the childhood CNS disorder mucolipidosis type IV.		2023
37681418	Single cell proteomics analysis of drug response shows its potential as a drug discovery platform.		2023
37285026	A review of the current state of single-cell proteomics and future perspective.		2023
36776823	Systematic conformation-to-phenotype mapping via limited deep-sequencing of proteins.	ArXiv	2023
37267908	Systematic conformation-to-phenotype mapping via limited deep sequencing of proteins.	Mol Cell	2023
37252755	Improved isolation of extracellular vesicles by removal of both free proteins and lipoproteins.	Elife	2023
37167320	Integration of a multi-omics stem cell differentiation dataset using a dynamical model.	PLoS Genet	2023
35094488	In-depth analysis of proteomic and genomic fluctuations during the time course of human embryonic stem cells directed differentiation into beta cells.	Proteomics	2022
36306280	A Proximity biotinylation assay with a host protein bait reveals multiple factors modulating enterovirus replication.	PLoS Pathogens	2022
34978798	Development of Photolenalidomide for Cellular Target Identification.	J Am Chem Soc	2022
35214193	Hyaluronic Acid Nanoparticles for Immunogenic Chemotherapy of Leukemia and T-Cell Lymphoma.	Pharmaceutics	2022
33334891	USP13 interacts with cohesin and regulates its ubiquitination in human cells.	Journal of Biological Chemistry	2021
33751108	miR-15a/16-1 deletion in activated B cells promotes plasma cell and mature B-cell neoplasms.	Blood	2021
34051234	Biliary excretion of excess iron in mice requires hepatocyte iron import by Slc39a14.	Journal of Biological Chemistry	2021
33936570	Quantitative proteomic analysis of extracellular vesicle subgroups isolated by an optimized method combining polymer-based precipitation and size exclusion chromatography.	Journal of Extracellular Vesicles	2021
33055246	Endothelial extracellular vesicles contain protective proteins and rescue ischemia-reperfusion injury in a human heart-on-chip.	Science Translational Medicine	2020
32163288	National Cancer Institute Think-Tank Meeting Report on Proteomic Cartography and Biomarkers at the Single-Cell Level: Interrogation of Premalignant Lesions.	J Proteome Res	2020
32814039	Daily Cycles of Reversible Protein Condensation in Cyanobacteria.	Cell Reports	2020
32744807	Proteomic and Metabolomic Characterization of Human Neurovascular Unit Cells in Response to Methamphetamine.	Advanced Biosystems	2020
33224901	The Role of Small Extracellular Vesicles in Viral-Protozoan Symbiosis: Lessons From in an Isogenic Host Parasite Model.	Frontiers in Cellular and Infection Microbiology	2020
31010829	Systematic proteomics of endogenous human cohesin reveals an interaction with diverse splicing factors and RNA-binding proteins required for mitotic progression.	Journal of Biological Chemistry	2019
31722214	Abnormal Striatal Development Underlies the Early Onset of Behavioral Deficits in Shank3B Mice.	Cell Reports	2019
30282776	Quantifying Homologous Proteins and Proteoforms.	Mol Cell Proteomics	2019
31138640	Molecular physiology of chemical defenses in a poison frog.	Journal of Experimental Biology	2019
30125269	A linked organ-on-chip model of the human neurovascular unit reveals the metabolic coupling of endothelial and neuronal cells.	Nature Biotechnology	2018
30343672	SCoPE-MS: mass spectrometry of single mammalian cells quantifies proteome heterogeneity during cell differentiation.	Genome Biol	2018
30242128	Dynamic disulfide exchange in a crystallin protein in the human eye lens promotes cataract-associated aggregation.	J Biol Chem	2018
28031399	Neurons derived from different brain regions are inherently different in vitro: a novel multiregional brain-on-a-chip.	Journal of Neurophysiology	2017
28930663	The TREM2-APOE Pathway Drives the Transcriptional Phenotype of Dysfunctional Microglia in Neurodegenerative Diseases.	Immunity	2017
27918561	A human microprotein that interacts with the mRNA decapping complex.	Nat Chem Biol	2017
26359986	Reversible, Specific, Active Aggregates of Endogenous Proteins Assemble upon Heat Stress.	Cell	2015
25892240	Systems-level response to point mutations in a core metabolic enzyme modulates genotype-phenotype relationship.	Cell Rep	2015
26565899	Differential Stoichiometry among Core Ribosomal Proteins.	Cell Rep	2015
24610814	A human short open reading frame (sORF)-encoded polypeptide that stimulates DNA end joining.	J Biol Chem	2014
24490786	Discovery of human sORF-encoded polypeptides (SEPs) in cell lines and tissue.	J Proteome Res	2014
24767987	Constant growth rate can be supported by decreasing energy flux and increasing aerobic glycolysis.	Cell Rep	2014
23160002	Peptidomic discovery of short open reading frame-encoded peptides in human cells.	Nat Chem Biol	2013
24086506	Quantifying condition-dependent intracellular protein levels enables high-precision fitness estimates.	PLoS One	2013
24077307	Regulation of Toll signaling and inflammation by Î²-arrestin and the SUMO protease Ulp1.	Genetics	2013
23349292	Tunable signal processing through modular control of transcription factor translocation.	Science	2013
21187411	Misfolded proteins impose a dosage-dependent fitness cost and trigger a cytosolic unfolded protein response in yeast.	Proceedings of the National Academy of Sciences of the United States of America	2011
19740738	Insulin-stimulated phosphorylation of the Rab GTPase-activating protein TBC1D1 regulates GLUT4 translocation.	Journal of Biological Chemistry	2009
18721752	System-wide investigation of ErbB4 reveals 19 sites of Tyr phosphorylation that are unusually selective in their recruitment properties.	Chem Biol	2008
18324733	Temporal variations of the postnatal rat urinary proteome as a reflection of systemic maturation.	Proteomics	2008
17118724	Global methods for protein glycosylation analysis by mass spectrometry.		2006
16503151	Long-lived electron capture dissociation product ions experience radical migration via hydrogen abstraction.	Journal of the American Society for Mass Spectrometry	2006
16353130	A new hybrid electrospray Fourier transform mass spectrometer: design and performance characteristics.	Rapid Communications in Mass Spectrometry	2006
16271296	Characterization of a new qQq-FTICR mass spectrometer for post-translational modification analysis and top-down tandem mass spectrometry of whole proteins.	J Am Soc Mass Spectrom	2005
14991689	De novo sequencing of antimicrobial peptides isolated from the venom glands of the wolf spider Lycosa singoriensis.	Journal of Mass Spectrometry	2004