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Author Details

Lee A D Cooper
Northwestern Feinberg School of Medicine
2008
69
30
PMIDPaper TitleJournal TitlePublished Year
37608771Spatial analyses of immune cell infiltration in cancer: current methods and future directions: A report of the International Immuno-Oncology Biomarker Working Group on Breast Cancer.J Pathol2023
37608772Pitfalls in machine learning-based assessment of tumor-infiltrating lymphocytes in breast cancer: A report of the International Immuno-Oncology Biomarker Working Group on Breast CancerJ Pathol2023
37608771Spatial analyses of immune cell infiltration in cancer: current methods and future directions: A report of the International Immuno-Oncology Biomarker Working Group on Breast Cancer.J Pathol2023
37608772Pitfalls in machine learning-based assessment of tumor-infiltrating lymphocytes in breast cancer: A report of the International Immuno-Oncology Biomarker Working Group on Breast CancerJ Pathol2023
33355190Interactive Classification of Whole-Slide Imaging Data for Cancer Researchers.Cancer Res2021
33355190Interactive Classification of Whole-Slide Imaging Data for Cancer Researchers.Cancer Res2021
30666698Incorporation of a spectral model in a convolutional neural network for accelerated spectral fitting.Magn Reson Med2019
30854456The Brain Imaging Collaboration Suite (BrICS): A Cloud Platform for Integrating Whole-Brain Spectroscopic MRI into the Radiation Therapy Planning Workflow.Tomography2019
30726865Structured crowdsourcing enables convolutional segmentation of histology images.Bioinformatics2019
30666698Incorporation of a spectral model in a convolutional neural network for accelerated spectral fitting.Magn Reson Med2019
31304368Deep learning enables robust assessment and selection of human blastocysts after in vitro fertilization.NPJ Digit Med2019
31548239Phosphoinositide 3-Kinase Signaling Can Modulate MHC Class I and II Expression.Mol Cancer Res2019
31548239Phosphoinositide 3-Kinase Signaling Can Modulate MHC Class I and II Expression.Mol Cancer Res2019
31304368Deep learning enables robust assessment and selection of human blastocysts after in vitro fertilization.NPJ Digit Med2019
30854456The Brain Imaging Collaboration Suite (BrICS): A Cloud Platform for Integrating Whole-Brain Spectroscopic MRI into the Radiation Therapy Planning Workflow.Tomography2019
30726865Structured crowdsourcing enables convolutional segmentation of histology images.Bioinformatics2019
29186335The OncoPPi Portal: an integrative resource to explore and prioritize protein-protein interactions for cancer target discovery.Bioinformatics2018
30417117Multi-faceted computational assessment of risk and progression in oligodendroglioma implicates NOTCH and PI3K pathways.NPJ Precis Oncol2018
29186335The OncoPPi Portal: an integrative resource to explore and prioritize protein-protein interactions for cancer target discovery.Bioinformatics2018
29531073Predicting cancer outcomes from histology and genomics using convolutional networks.Proc Natl Acad Sci U S A2018
29520831A convolutional neural network to filter artifacts in spectroscopic MRI.Magn Reson Med2018
29288495PanCancer insights from The Cancer Genome Atlas: the pathologist's perspective.J Pathol2018
29739990TASI: A software tool for spatial-temporal quantification of tumor spheroid dynamics.Sci Rep2018
30417117Multi-faceted computational assessment of risk and progression in oligodendroglioma implicates NOTCH and PI3K pathways.NPJ Precis Oncol2018
29520831A convolutional neural network to filter artifacts in spectroscopic MRI.Magn Reson Med2018
29739990TASI: A software tool for spatial-temporal quantification of tumor spheroid dynamics.Sci Rep2018
29531073Predicting cancer outcomes from histology and genomics using convolutional networks.Proc Natl Acad Sci U S A2018
29288495PanCancer insights from The Cancer Genome Atlas: the pathologist's perspective.J Pathol2018
27896961IMAGING GENOMICS.Pac Symp Biocomput2017
28916782Predicting clinical outcomes from large scale cancer genomic profiles with deep survival models.Sci Rep2017
28497793Image-guided genomics of phenotypically heterogeneous populations reveals vascular signalling during symbiotic collective cancer invasion.Nat Commun2017
28416792Corrigendum: The OncoPPi network of cancer-focused protein-protein interactions to inform biological insights and therapeutic strategies.Nat Commun2017
28751449T2-FLAIR Mismatch, an Imaging Biomarker for IDH and 1p/19q Status in Lower-grade Gliomas: A TCGA/TCIA Project.Clin Cancer Res2017
291422975-Aminolevulinic Acid Guided Sampling of Glioblastoma Microenvironments Identifies Pro-Survival Signaling at Infiltrative Margins.Sci Rep2017
29092945The Digital Slide Archive: A Software Platform for Management, Integration, and Analysis of Histology for Cancer Research.Cancer Res2017
29109450Interactive phenotyping of large-scale histology imaging data with HistomicsML.Sci Rep2017
28087810AKT1, LKB1, and YAP1 Revealed as MYC Interactors with NanoLuc-Based Protein-Fragment Complementation Assay.Mol Pharmacol2017
27896961IMAGING GENOMICS.Pac Symp Biocomput2017
28205554The OncoPPi network of cancer-focused protein-protein interactions to inform biological insights and therapeutic strategies.Nat Commun2017
28118365MEDICI: Mining Essentiality Data to Identify Critical Interactions for Cancer Drug Target Discovery and Development.PLoS One2017
28102310Coordinated cell motility is regulated by a combination of LKB1 farnesylation and kinase activity.Sci Rep2017
28087810AKT1, LKB1, and YAP1 Revealed as MYC Interactors with NanoLuc-Based Protein-Fragment Complementation Assay.Mol Pharmacol2017
28102310Coordinated cell motility is regulated by a combination of LKB1 farnesylation and kinase activity.Sci Rep2017
28497793Image-guided genomics of phenotypically heterogeneous populations reveals vascular signalling during symbiotic collective cancer invasion.Nat Commun2017
28118365MEDICI: Mining Essentiality Data to Identify Critical Interactions for Cancer Drug Target Discovery and Development.PLoS One2017
28205554The OncoPPi network of cancer-focused protein-protein interactions to inform biological insights and therapeutic strategies.Nat Commun2017
28416792Corrigendum: The OncoPPi network of cancer-focused protein-protein interactions to inform biological insights and therapeutic strategies.Nat Commun2017
29109450Interactive phenotyping of large-scale histology imaging data with HistomicsML.Sci Rep2017
291422975-Aminolevulinic Acid Guided Sampling of Glioblastoma Microenvironments Identifies Pro-Survival Signaling at Infiltrative Margins.Sci Rep2017
29092945The Digital Slide Archive: A Software Platform for Management, Integration, and Analysis of Histology for Cancer Research.Cancer Res2017
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Co-authored papers 29
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Roel G W Verhaak
Yale School of Medicine
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Hannah Y Wen
Memorial Sloan Kettering Cancer Center
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Paul J van Diest
University Medical Center Utrecht
Co-authored papers 2
Daniel L Rubin
Stanford University.
Co-authored papers 2
Lajos Pusztai
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Thomas Walter
PSL University
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Wai-Kwan Alfred Yung
University of Texas M.D. Anderson Cancer Center
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Jochen K Lennerz
Massachusetts General Hospital/Harvard Medical School
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Jorge S Reis-Filho
Memorial Sloan-Kettering Cancer Center
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Matthew Meyerson
Broad Institute
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Paula I Gonzalez-Ericsson
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Release 1.2