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Author Details

Timothy J Donohue
University of Wisconsin
1976
177
40
Christopher Churas (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36502920A broad specificity β-propeller enzyme from Rhodopseudomonas palustris that hydrolyzes many lactones including γ-valerolactone.J Biol Chem2023
38014958Production of carotenoids from aromatics and pretreated lignocellulosic biomass by <i>Novosphingobium aromaticivorans</i>.Appl Environ Microbiol2023
37662258Tools for Genetic Engineering and Gene Expression Control in <i>Novosphingobium aromaticivorans</i> and <i>Rhodobacter sphaeroides</i>.bioRxiv2023
37521139Complete sequences of conjugal helper plasmids pRK2013 and pEVS104.MicroPubl Biol2023
37613818Quantitating Storage Granule Size, Accumulation, and Localization in Rhodobacter sphaeroides Using Cryo-Electron Tomography and Light Microscopy.Microsc Microanal2023
37882546An account of American Academy of Microbiology reforms and pandemic operations.mBio2023
38095310A randomized multiplex CRISPRi-Seq approach for the identification of critical combinations of genes.Elife2023
37324413A metagenome-level analysis of a microbial community fermenting ultra-filtered milk permeate.Front Bioeng Biotechnol2023
37389444A previously uncharacterized divisome-associated lipoprotein, DalA, is needed for normal cell division in <i>Rhodobacterales</i>.mBio2023
36945652A randomized multiplex CRISPRi-Seq approach for the identification of critical combinations of genes.bioRxiv2023
37283520The role of CenKR in the coordination of <i>Rhodobacter sphaeroides</i> cell elongation and division.mBio2023
37260833Comparison of metagenomes from fermentation of various agroindustrial residues suggests a common model of community organization.Front Bioeng Biotechnol2023
34709619Using Genome Scale Mutant Libraries to Identify Essential Genes.Methods Mol Biol2022
35770995Metagenomes and Metagenome-Assembled Genomes from Microbial Communities Fermenting Ultrafiltered Milk Permeate.Microbiol Resour Announc2022
35767559The essential Rhodobacter sphaeroides CenKR two-component system regulates cell division and envelope biosynthesis.PLoS Genet2022
35343806Metagenome-Assembled Genomes from a Microbiome Converting Xylose to Medium-Chain Carboxylic Acids.Microbiol Resour Announc2022
35575561Metagenomes from 25 Low-Abundance Microbes in a Partial Nitritation Anammox Microbiome.Microbiol Resour Announc2022
35862918Metagenomes and Metagenome-Assembled Genomes from Microbiomes Metabolizing Thin Stillage from an Ethanol Biorefinery.Microbiol Resour Announc2022
35751080Utilization of lignocellulosic biofuel conversion residue by diverse microorganisms.Biotechnol Biofuels Bioprod2022
35448553iNovo479: Metabolic Modeling Provides a Roadmap to Optimize Bioproduct Yield from Deconstructed Lignin Aromatics by <i>Novosphingobium aromaticivorans</i>.Metabolites2022
35414209Correction for Beach et al., "Exploring the Meta-regulon of the CRP/FNR Family of Global Transcriptional Regulators in a Partial-Nitritation Anammox Microbiome".mSystems2022
35894622Metagenome-Assembled Genomes from a Microbiome Grown in Dairy Manure Hydrolysate.Microbiol Resour Announc2022
35299028Editorial overview: Microbial activities powering society.Curr Opin Microbiol2022
34254822Promoter Architecture Differences among <i>Alphaproteobacteria</i> and Other Bacterial Taxa.mSystems2021
33675449Kinetic modeling of anaerobic degradation of plant-derived aromatic mixtures by Rhodopseudomonas palustris.Biodegradation2021
33531406A High-Throughput Method for Identifying Novel Genes That Influence Metabolic Pathways Reveals New Iron and Heme Regulation in Pseudomonas aeruginosa.mSystems2021
33858925Delila-PY, a Pipeline for Utilizing the Delila Suite of Software to Identify Potential DNA Binding Motifs.Microbiol Resour Announc2021
33579679Redundancy in aromatic O-demethylation and ring opening reactions in <i>Novosphingobium aromaticivorans</i> and their impact in the metabolism of plant derived phenolics.Appl Environ Microbiol2021
34613756Aromatic Dimer Dehydrogenases from <i>Novosphingobium aromaticivorans</i> Reduce Monoaromatic Diketones.Appl Environ Microbiol2021
34636676Exploring the Meta-regulon of the CRP/FNR Family of Global Transcriptional Regulators in a Partial-Nitritation Anammox Microbiome.mSystems2021
34414173Mixed Acid Fermentation of Carbohydrate-Rich Dairy Manure Hydrolysate.Front Bioeng Biotechnol2021
34336807Diverse Profile of Fermentation Byproducts From Thin Stillage.Front Bioeng Biotechnol2021
32430476The NtrYX Two-Component System Regulates the Bacterial Cell Envelope.mBio2020
31704684Medium-Chain Fatty Acid Synthesis by "<i>Candidatus</i> Weimeria bifida" gen. nov., sp. nov., and "<i>Candidatus</i> Pseudoramibacter fermentans" sp. nov.Appl Environ Microbiol2020
33168725A majority of <i>Rhodobacter sphaeroides</i> promoters lack a crucial RNA polymerase recognition feature, enabling coordinated transcription activation.Proc Natl Acad Sci U S A2020
33318184Rewiring the specificity of extracytoplasmic function sigma factors.Proc Natl Acad Sci U S A2020
32883797Genome-Wide Identification of Transcription Start Sites in Two <i>Alphaproteobacteria</i>, Rhodobacter sphaeroides 2.4.1 and Novosphingobium aromaticivorans DSM 12444.Microbiol Resour Announc2020
32994290Diagnosing and Predicting Mixed-Culture Fermentations with Unicellular and Guild-Based Metabolic Models.mSystems2020
32554783COnTORT: COmprehensive Transcriptomic ORganizational Tool for Simultaneously Retrieving and Organizing Numerous Gene Expression Data Sets from the NCBI Gene Expression Omnibus Database.Microbiol Resour Announc2020
32434926A bacterial biosynthetic pathway for methylated furan fatty acids.J Biol Chem2020
30541921A heterodimeric glutathione <i>S</i>-transferase that stereospecifically breaks lignin's β(<i>R</i>)-aryl ether bond reveals the diversity of bacterial β-etherases.J Biol Chem2019
31115926Discovery of the extracytoplasmic function Ï¿ factors.Mol Microbiol2019
31111523Shedding light on a Group IV (ECF11) alternative Ï¿ factor.Mol Microbiol2019
29180366<i>In Vitro</i> Enzymatic Depolymerization of Lignin with Release of Syringyl, Guaiacyl, and Tricin Units.Appl Environ Microbiol2018
30034526Increasing the economic value of lignocellulosic stillage through medium-chain fatty acid production.Biotechnol Biofuels2018
30505946Metatranscriptomic and Thermodynamic Insights into Medium-Chain Fatty Acid Production Using an Anaerobic Microbiome.mSystems2018
29449375<i>Novosphingobium aromaticivorans</i> uses a Nu-class glutathione <i>S</i>-transferase as a glutathione lyase in breaking the β-aryl ether bond of lignin.J Biol Chem2018
28744485Combining Genome-Scale Experimental and Computational Methods To Identify Essential Genes in <i>Rhodobacter sphaeroides</i>.mSystems2017
28346893Biochemical transformation of lignin for deriving valued commodities from lignocellulose.Curr Opin Biotechnol2017
28536286Mutations That Alter the Bacterial Cell Envelope Increase Lipid Production.mBio2017
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Collaborators

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Co-authored papers 4
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Co-authored papers 3
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University of Wisconsin-Madison
Co-authored papers 3
University of Wisconsin - Madison
Co-authored papers 3
University of Washington
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University of California
Co-authored papers 3
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Co-authored papers 3
University of California san francisco
Co-authored papers 3
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Co-authored papers 2
School of Pharmacy, University of Wisconsin-Madison
Co-authored papers 2
ICAR-Central Soil Salinity Research Institute
Co-authored papers 2
University of Wisconsin
Co-authored papers 2
Lawrence Berkeley National Laboratory
Co-authored papers 2
Gladstone Institutes
Co-authored papers 2
The Genome Center at Washington University, Washington University School of Medicine
Co-authored papers 2
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Co-authored papers 2
Joint BioEnergy Institute, USA Lawrence Berkeley National Laboratory
Co-authored papers 2
McGovern Medical School
Co-authored papers 2
Center for Genomic Science Innovation, University of Wisconsin-Madison
Co-authored papers 2
Scripps Institution of Oceanography, University of California San Diego
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Center for Genomic Science Innovation, University of Wisconsin-Madison
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Center for Integrated Protein Science, Technische Universitat Munchen
Co-authored papers 1
Center for Biomedical Ethics, Stanford University School of Medicine
Co-authored papers 1
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