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Author Details

Isabell Bludau
Max-Planck Institute of Biochemistry
2017
25
13
PMIDPaper TitleJournal TitlePublished Year
36744821Toward an Integrated Machine Learning Model of a Proteomics Experiment.J Proteome Res2023
37527012AlphaPeptStats: an open-source Python package for automated and scalable statistical analysis of mass spectrometry-based proteomics.Bioinformatics2023
37984987Mitochondrial phosphoproteomes are functionally specialized across tissues.Life Sci Alliance2023
37602975Robust dimethyl-based multiplex-DIA doubles single-cell proteome depth via a reference channel.Mol Syst Biol2023
37968396The social and structural architecture of the yeast protein interactome.Nature2023
37058003Rapid Profiling of Protein Complex Reorganization in Perturbed Systems.J Proteome Res2023
36549590Native Size-Exclusion Chromatography-Based Mass Spectrometry Reveals New Components of the Early Heat Shock Protein 90 Inhibition Response Among Limited Global Changes.Mol Cell Proteomics2023
34586352AlphaMap: an open-source Python package for the visual annotation of proteomics data with sequence-specific knowledge.Bioinformatics2022
35576205The structural context of posttranslational modifications at a proteome-wide scale.PLoS Biol2022
35574625The impact of genomic variation on protein phosphorylation states and regulatory networks.Mol Syst Biol2022
36433986AlphaPeptDeep: a modular deep learning framework to predict peptide properties for proteomics.Nat Commun2022
35107884A practical guide to interpreting and generating bottom-up proteomics data visualizations.Proteomics2022
34155216Systematic detection of functional proteoform groups from bottom-up proteomic datasets.Nat Commun2021
33923221Discovery-Versus Hypothesis-Driven Detection of Protein-Protein Interactions and Complexes.Int J Mol Sci2021
33859439PCprophet: a framework for protein complex prediction and differential analysis using proteomic data.Nat Methods2021
34663829Phosphoproteome profiling uncovers a key role for CDKs in TNF signaling.Nat Commun2021
32235894Proteomic and interactomic insights into the molecular basis of cell functional diversity.Nat Rev Mol Cell Biol2020
32027860A Global Screen for Assembly State Changes of the Mitotic Proteome by SEC-SWATH-MS.Cell Syst2020
33257825diaPASEF: parallel accumulation-serial fragmentation combined with data-independent acquisition.Nat Methods2020
33333029SECAT: Quantifying Protein Complex Dynamics across Cell States by Network-Centric Analysis of SEC-SWATH-MS Profiles.Cell Syst2020
33259127Integrative proteomics reveals principles of dynamic phosphosignaling networks in human erythropoiesis.Mol Syst Biol2020
32690956Complex-centric proteome profiling by SEC-SWATH-MS for the parallel detection of hundreds of protein complexes.Nat Protoc2020
32303723Author Correction: Proteomic and interactomic insights into the molecular basis of cell functional diversity.Nat Rev Mol Cell Biol2020
30778230Multi-omic measurements of heterogeneity in HeLa cells across laboratories.Nat Biotechnol2019
28825704Statistical control of peptide and protein error rates in large-scale targeted data-independent acquisition analyses.Nat Methods2017
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Collaborators

Ruedi Aebersold
Institute of Molecular Systems Biology, ETH Zurich
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Moritz Heusel
Lund University
Co-authored papers 7
Ben C Collins
Queen's University of Belfast
Co-authored papers 7
Yansheng Liu
Yale University School of Medicine
Co-authored papers 4
Andreas-David Brunner
Max-Planck Institute of Biochemistry
Co-authored papers 4
Fabian Frommelt
CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences
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Matthias Mann
Max-Planck Institute of Biochemistry
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Matthias Gstaiger
Institute of Molecular Systems Biology, ETH Zurich
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Evan G Williams
University of Luxembourg
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Federico Uliana
Institute of Biochemistry, ETH Zurich
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Institute of Molecular Systems Biology, ETH Zurich
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J. David Gladstone Institutes
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Paola Picotti
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Juan Antonio Vizca??no
EMBL-European Bioinformatics Institute (EMBL-EBI)
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Michael J MacCoss
University of Washington
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Biomedicine Discovery Institute, Monash University
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Bernd Wollscheid
ETH Zurich
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Anthony W Purcell
Monash Biomedicine Discovery Institute, Monash University
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Lennart Martens
Co-authored papers 1
Charlotte Nicod
Institute of Molecular Systems Biology, ETH Zurich
Co-authored papers 1
Andrea Califano
Columbia University
Co-authored papers 1
Patrick G A Pedrioli
Institute of Translational Medicine, Swiss Federal Institute of Technology/ETH Zurich
Co-authored papers 1
Christie L Hunter
Co-authored papers 1
Brendan MacLean
Co-authored papers 1
T??may Capraz
Co-authored papers 1
Mark Larance
The University of Sydney
Co-authored papers 1
Andreas Beyer
University of Cologne
Co-authored papers 1
Paul Workman
The Institute of Cancer Research
Co-authored papers 1
Fabian J Theis
Technical University of Munich
Co-authored papers 1
Mitchell P Levesque
University Hospital Zurich
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Release 1.2