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Author Details

Katherine Huang
Broad Institute of MIT and Harvard
2004
37
33
PMIDPaper TitleJournal TitlePublished Year
36574939High yield expression and purification of full-length Neurotensin with pyroglutamate modification.Protein Expr Purif2023
34534872SARS-CoV-2 RNA concentrations in wastewater foreshadow dynamics and clinical presentation of new COVID-19 cases.Sci Total Environ2022
34274898Wastewater surveillance of SARS-CoV-2 across 40 U.S. states from February to June 2020.Water Res2021
33851176Glucocorticoids and B Cell Depleting Agents Substantially Impair Immunogenicity of mRNA Vaccines to SARS-CoV-2.medRxiv2021
30911128Transmission of human-associated microbiota along family and social networks.Nat Microbiol2019
29170280Analysis of <i>Fusobacterium</i> persistence and antibiotic response in colorectal cancer.Science2017
27409808Mobile genes in the human microbiome are structured from global to individual scales.Nature2016
25964341Identifying personal microbiomes using metagenomic codes.Proc Natl Acad Sci U S A2015
26374288Host genetic variation impacts microbiome composition across human body sites.Genome Biol2015
26368049Detection of low-abundance bacterial strains in metagenomic datasets by eigengenome partitioning.Nat Biotechnol2015
24203705MetaRef: a pan-genomic database for comparative and community microbial genomics.Nucleic Acids Res2014
22895163Ecology of uncultured Prochlorococcus clades revealed through single-cell genomics and biogeographic analysis.ISME J2013
23657361Genetic diversity in cultured and wild marine cyanomyoviruses reveals phosphorus stress as a strong selective agent.ISME J2013
22102570ProPortal: a resource for integrated systems biology of Prochlorococcus and its phage.Nucleic Acids Res2012
22904687The Human Microbiome Project: a community resource for the healthy human microbiome.PLoS Biol2012
22455878Efficient and robust RNA-seq process for cultured bacteria and complex community transcriptomes.Genome Biol2012
21562599Transcriptome response of high- and low-light-adapted Prochlorococcus strains to changing iron availability.ISME J2011
21844365Phage auxiliary metabolic genes and the redirection of cyanobacterial host carbon metabolism.Proc Natl Acad Sci U S A2011
20038696Global transcriptional, physiological, and metabolite analyses of the responses of Desulfovibrio vulgaris hildenborough to salt adaptation.Appl Environ Microbiol2010
20479271Catalytic promiscuity in the biosynthesis of cyclic peptide secondary metabolites in planktonic marine cyanobacteria.Proc Natl Acad Sci U S A2010
20662890Genomic analysis of oceanic cyanobacterial myoviruses compared with T4-like myoviruses from diverse hosts and environments.Environ Microbiol2010
20345942UV hyper-resistance in Prochlorococcus MED4 results from a single base pair deletion just upstream of an operon encoding nudix hydrolase and photolyase.Environ Microbiol2010
19906701MicrobesOnline: an integrated portal for comparative and functional genomics.Nucleic Acids Res2010
17630305Analysis of a ferric uptake regulator (Fur) mutant of Desulfovibrio vulgaris Hildenborough.Appl Environ Microbiol2007
17921288Response of Desulfovibrio vulgaris to alkaline stress.J Bacteriol2007
18159947Patterns and implications of gene gain and loss in the evolution of Prochlorococcus.PLoS Genet2007
16391131Cellular response of Shewanella oneidensis to strontium stress.Appl Environ Microbiol2006
17083272The evolution of two-component systems in bacteria reveals different strategies for niche adaptation.PLoS Comput Biol2006
16707698Salt stress in Desulfovibrio vulgaris Hildenborough: an integrated genomics approach.J Bacteriol2006
16751553Energetic consequences of nitrite stress in Desulfovibrio vulgaris Hildenborough, inferred from global transcriptional analysis.Appl Environ Microbiol2006
16885312Temporal transcriptomic analysis as Desulfovibrio vulgaris Hildenborough transitions into stationary phase during electron donor depletion.Appl Environ Microbiol2006
16452448Transcriptome profiling of Shewanella oneidensis gene expression following exposure to acidic and alkaline pH.J Bacteriol2006
16484192Global analysis of heat shock response in Desulfovibrio vulgaris Hildenborough.J Bacteriol2006
15701760A novel method for accurate operon predictions in all sequenced prokaryotes.Nucleic Acids Res2005
15930492Operon formation is driven by co-regulation and not by horizontal gene transfer.Genome Res2005
15998914The MicrobesOnline Web site for comparative genomics.Genome Res2005
15122302Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78.Nat Biotechnol2004
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Collaborators

Eric J Alm
Massachusetts Institute of Technology 21 Ames St. Cambridge
Co-authored papers 19
Adam P Arkin
Lawrence Berkeley National Laboratory
Co-authored papers 14
Jizhong Zhou
Institute for Environmental Genomics, University of Oklahoma
Co-authored papers 9
Libusha Kelly
Albert Einstein College of Medicine
Co-authored papers 7
Zhili He
Environmental Microbiomics Research Center, Sun Yat-Sen University
Co-authored papers 7
Qiang He
University of Tennessee
Co-authored papers 7
Judy D Wall
University of Missouri
Co-authored papers 7
Terry C Hazen
University of Tennessee
Co-authored papers 7
Morgan N Price
Lawrence Berkeley National Laboratory
Co-authored papers 4
Matthew W Fields
Center for Biofilm Engineering (CBE), Montana State University
Co-authored papers 3
Bruce W Birren
Broad Institute of MIT and Harvard
Co-authored papers 3
Marcin P Joachimiak
E O Lawrence Berkeley National Laboratory, UCSF Medical Center, University of California, Berkeley, University of Chicago
Co-authored papers 3
Curtis Huttenhower
Broad Institute of MIT and Harvard
Co-authored papers 3
Zamin K Yang
Oak Ridge National Laboratory
Co-authored papers 3
Sharon Borglin
Lawrence Berkeley National Laboratory
Co-authored papers 2
Huiming Ding
Massachusetts Institute of Technology
Co-authored papers 2
Huei-Che B Yen
Co-authored papers 2
Matthew R Henn
Co-authored papers 2
Tingfen Yan
Center for Precision Health Research, National Human Genome Research Institute
Co-authored papers 2
Owen White
Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 2
Liyou Wu
Institute for Environmental Genomics, University of Oklahoma
Co-authored papers 2
Aindrila Mukhopadhyay
Joint BioEnergy Institute
Co-authored papers 2
Inna Dubchak
Lawrence Berkeley National Laboratory
Co-authored papers 2
Edward E K Baidoo
Joint BioEnergy Institute
Co-authored papers 2
Luke R Thompson
Northern Gulf Institute, Mississippi State University
Co-authored papers 2
Keith Keller
Co-authored papers 2
David A Stahl
University of Washington
Co-authored papers 2
Dominique C Joyner
University of Tennessee
Co-authored papers 2
Christopher L Hemme
University of Rhode Island
Co-authored papers 2
Jay D Keasling
University of California berkeley
Co-authored papers 2
Release 1.2