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Author Details

Felipe da Veiga Leprevost
University of Michigan ann arbor
2013
38
19
PMIDPaper TitleJournal TitlePublished Year
36203013Post-translational modifications reshape the antigenic landscape of the MHC I immunopeptidome in tumors.Nat Biotechnol2023
36203013Post-translational modifications reshape the antigenic landscape of the MHC I immunopeptidome in tumors.Nat Biotechnol2023
37910016Autoinhibited kinesin-1 adopts a hierarchical folding pattern.Elife2023
37894717The Intrinsically Disordered N Terminus in Atg12 from Yeast Is Necessary for the Functional Structure of the Protein.Int J Mol Sci2023
36747757Autoinhibited kinesin-1 adopts a hierarchical folding pattern.bioRxiv2023
37308510Unraveling the glycosylated immunopeptidome with HLA-Glyco.Nat Commun2023
37541199Proteogenomic analysis of chemo-refractory high-grade serous ovarian cancer.Cell2023
37910016Autoinhibited kinesin-1 adopts a hierarchical folding pattern.Elife2023
37894717The Intrinsically Disordered N Terminus in Atg12 from Yeast Is Necessary for the Functional Structure of the Protein.Int J Mol Sci2023
37541199Proteogenomic analysis of chemo-refractory high-grade serous ovarian cancer.Cell2023
37308510Unraveling the glycosylated immunopeptidome with HLA-Glyco.Nat Commun2023
36747757Autoinhibited kinesin-1 adopts a hierarchical folding pattern.bioRxiv2023
35780830GRASP55 regulates the unconventional secretion and aggregation of mutant huntingtin.J Biol Chem2022
35780830GRASP55 regulates the unconventional secretion and aggregation of mutant huntingtin.J Biol Chem2022
33417831Proteogenomic insights into the biology and treatment of HPV-negative head and neck squamous cell carcinoma.Cancer Cell2021
34070658Proteomic Analyses of Vitreous in Proliferative Diabetic Retinopathy: Prior Studies and Future Outlook.J Clin Med2021
33568339PTM-Shepherd: Analysis and Summarization of Post-Translational and Chemical Modifications From Open Search Results.Mol Cell Proteomics2021
33417831Proteogenomic insights into the biology and treatment of HPV-negative head and neck squamous cell carcinoma.Cancer Cell2021
34861815A validated analysis pipeline for mass spectrometry-based vitreous proteomics: new insights into proliferative diabetic retinopathy.Clin Proteomics2021
34737085Deep-Learning-Derived Evaluation Metrics Enable Effective Benchmarking of Computational Tools for Phosphopeptide Identification.Mol Cell Proteomics2021
34359613Differences in Extracellular Vesicle Protein Cargo Are Dependent on Head and Neck Squamous Cell Carcinoma Cell of Origin and Human Papillomavirus Status.Cancers (Basel)2021
33568339PTM-Shepherd: Analysis and Summarization of Post-Translational and Chemical Modifications From Open Search Results.Mol Cell Proteomics2021
34861815A validated analysis pipeline for mass spectrometry-based vitreous proteomics: new insights into proliferative diabetic retinopathy.Clin Proteomics2021
34737085Deep-Learning-Derived Evaluation Metrics Enable Effective Benchmarking of Computational Tools for Phosphopeptide Identification.Mol Cell Proteomics2021
34070658Proteomic Analyses of Vitreous in Proliferative Diabetic Retinopathy: Prior Studies and Future Outlook.J Clin Med2021
34359613Differences in Extracellular Vesicle Protein Cargo Are Dependent on Head and Neck Squamous Cell Carcinoma Cell of Origin and Human Papillomavirus Status.Cancers (Basel)2021
32265444Quantitative proteomic landscape of metaplastic breast carcinoma pathological subtypes and their relationship to triple-negative tumors.Nat Commun2020
32265444Quantitative proteomic landscape of metaplastic breast carcinoma pathological subtypes and their relationship to triple-negative tumors.Nat Commun2020
32058701Deep Proteomics Using Two Dimensional Data Independent Acquisition Mass Spectrometry.Anal Chem2020
32338005Crystal-C: A Computational Tool for Refinement of Open Search Results.J Proteome Res2020
31923397Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma.Cell2020
33046907Regulation of ALT-associated homology-directed repair by polyADP-ribosylation.Nat Struct Mol Biol2020
32669682Philosopher: a versatile toolkit for shotgun proteomics data analysis.Nat Methods2020
32058701Deep Proteomics Using Two Dimensional Data Independent Acquisition Mass Spectrometry.Anal Chem2020
31923397Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma.Cell2020
33046907Regulation of ALT-associated homology-directed repair by polyADP-ribosylation.Nat Struct Mol Biol2020
32669682Philosopher: a versatile toolkit for shotgun proteomics data analysis.Nat Methods2020
32338005Crystal-C: A Computational Tool for Refinement of Open Search Results.J Proteome Res2020
31185899Unveiling the partners of the DRBD2-mRNP complex, an RBP in Trypanosoma cruzi and ortholog to the yeast SR-protein Gbp2.BMC Microbiol2019
31675502Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma.Cell2019
31185899Unveiling the partners of the DRBD2-mRNP complex, an RBP in Trypanosoma cruzi and ortholog to the yeast SR-protein Gbp2.BMC Microbiol2019
31675502Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma.Cell2019
29386236The Ewing Sarcoma Secretome and Its Response to Activation of Wnt/beta-catenin Signaling.Mol Cell Proteomics2018
29386236The Ewing Sarcoma Secretome and Its Response to Activation of Wnt/beta-catenin Signaling.Mol Cell Proteomics2018
27576599Quantitative proteomic analysis of the Saccharomyces cerevisiae industrial strains CAT-1 and PE-2.J Proteomics2017
28379341BioContainers: an open-source and community-driven framework for software standardization.Bioinformatics2017
28486464Discovering and linking public omics data sets using the Omics Discovery Index.Nat Biotechnol2017
28696408A multi-protease, multi-dissociation, bottom-up-to-top-down proteomic view of the Loxosceles intermedia venom.Sci Data2017
28394336MSFragger: ultrafast and comprehensive peptide identification in mass spectrometry-based proteomics.Nat Methods2017
27576599Quantitative proteomic analysis of the Saccharomyces cerevisiae industrial strains CAT-1 and PE-2.J Proteomics2017
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Collaborators

Alexey I Nesvizhskii
University of Michigan ann arbor
Co-authored papers 23
Yasset Perez-Riverol
EMBL's European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 7
Dmitry M Avtonomov
Co-authored papers 6
Hui-Yin Chang
Co-authored papers 6
Andy T Kong
Co-authored papers 6
Marcin Cieslik
Co-authored papers 5
Bing Zhang
Baylor College of Medicine
Co-authored papers 5
Hui Zhang
Co-authored papers 4
Bo Wen
Co-authored papers 4
Kai Li
Co-authored papers 4
Seungyeul Yoo
Co-authored papers 4
Emily S Boja
Office of Cancer Clinical Proteomics Research, National Cancer Institute
Co-authored papers 4
Mehdi Mesri
Co-authored papers 4
Guo Ci Teo
Co-authored papers 4
Michael Schnaubelt
Co-authored papers 4
Kyung-Cho Cho
Co-authored papers 4
Tara Hiltke
Office of Cancer Clinical Proteomics Research, National Cancer Institute
Co-authored papers 4
Yize Li
Co-authored papers 3
Jianbo Pan
Co-authored papers 3
David J Clark
Co-authored papers 3
Francesca Petralia
Co-authored papers 3
Li Ding
McDonnell Genome Institute, Washington University School of Medicine
Co-authored papers 3
Weiping Ma
Co-authored papers 3
Maciej Wiznerowicz
Co-authored papers 3
Zhen Zhang
Co-authored papers 3
Jiayi Ji
Co-authored papers 3
Lijun Chen
Co-authored papers 3
Mathangi Thiagarajan
Co-authored papers 3
Saravana M Dhanasekaran
Co-authored papers 3
Azra Krek
Co-authored papers 3
Release 1.2