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Author Details

Thomas Girke
Institute for Integrative Genome Biology, University of California Riverside
1998
80
43
PMIDPaper TitleJournal TitlePublished Year
37500024Genome-wide identification of core components of ABA signaling and transcriptome analysis reveals gene circuits involved in castor bean (Ricinus communis L.) response to drought.Gene2023
37852796MYC acetylated lysine residues drive oncogenic cell transformation and regulate select genetic programs for cell adhesion-independent growth and survival.Genes Dev2023
37500024Genome-wide identification of core components of ABA signaling and transcriptome analysis reveals gene circuits involved in castor bean (Ricinus communis L.) response to drought.Gene2023
37852796MYC acetylated lysine residues drive oncogenic cell transformation and regulate select genetic programs for cell adhesion-independent growth and survival.Genes Dev2023
35878275Transcriptomic Evidence That Switching from Tobacco to Electronic Cigarettes Does Not Reverse Damage to the Respiratory Epithelium.Toxics2022
35504287Gene regulatory networks shape developmental plasticity of root cell types under water extremes in rice.Dev Cell2022
35878275Transcriptomic Evidence That Switching from Tobacco to Electronic Cigarettes Does Not Reverse Damage to the Respiratory Epithelium.Toxics2022
35504287Gene regulatory networks shape developmental plasticity of root cell types under water extremes in rice.Dev Cell2022
33008901High-throughput small molecule screening reveals Nrf2-dependent and -independent pathways of cellular stress resistance.Sci Adv2020
31862408HOTAIRM1 lncRNA is downregulated in clear cell renal cell carcinoma and inhibits the hypoxia pathway.Cancer Lett2020
33068417signatureSearch: environment for gene expression signature searching and functional interpretation.Nucleic Acids Res2020
33008901High-throughput small molecule screening reveals Nrf2-dependent and -independent pathways of cellular stress resistance.Sci Adv2020
31862408HOTAIRM1 lncRNA is downregulated in clear cell renal cell carcinoma and inhibits the hypoxia pathway.Cancer Lett2020
33068417signatureSearch: environment for gene expression signature searching and functional interpretation.Nucleic Acids Res2020
31251375Experimental Acute Exposure to Thirdhand Smoke and Changes in the Human Nasal Epithelial Transcriptome: A Randomized Clinical Trial.JAMA Netw Open2019
31724058Genetic Support for Longevity-Enhancing Drug Targets: Issues, Preliminary Data, and Future Directions.J Gerontol A Biol Sci Med Sci2019
31251375Experimental Acute Exposure to Thirdhand Smoke and Changes in the Human Nasal Epithelial Transcriptome: A Randomized Clinical Trial.JAMA Netw Open2019
31724058Genetic Support for Longevity-Enhancing Drug Targets: Issues, Preliminary Data, and Future Directions.J Gerontol A Biol Sci Med Sci2019
29596449Sequence analysis of the potato aphid Macrosiphum euphorbiae transcriptome identified two new viruses.PLoS One2018
29596449Sequence analysis of the potato aphid Macrosiphum euphorbiae transcriptome identified two new viruses.PLoS One2018
29805765Global isoform-specific transcript alterations and deregulated networks in clear cell renal cell carcinoma.Oncotarget2018
29805765Global isoform-specific transcript alterations and deregulated networks in clear cell renal cell carcinoma.Oncotarget2018
28724990Large meta-analysis of genome-wide association studies identifies five loci for lean body mass.Nat Commun2017
28724990Large meta-analysis of genome-wide association studies identifies five loci for lean body mass.Nat Commun2017
29116125Erratum: Large meta-analysis of genome-wide association studies identifies five loci for lean body mass.Nat Commun2017
28178331Large-scale bioactivity analysis of the small-molecule assayed proteome.PLoS One2017
28223504Transcriptome-wide microRNA and target dynamics in the fat body during the gonadotrophic cycle of <i>Aedes aegypti</i>.Proc Natl Acad Sci U S A2017
28223504Transcriptome-wide microRNA and target dynamics in the fat body during the gonadotrophic cycle of <i>Aedes aegypti</i>.Proc Natl Acad Sci U S A2017
28178331Large-scale bioactivity analysis of the small-molecule assayed proteome.PLoS One2017
29116125Erratum: Large meta-analysis of genome-wide association studies identifies five loci for lean body mass.Nat Commun2017
26822322A novel virus from Macrosiphum euphorbiae with similarities to members of the family Flaviviridae.J Gen Virol2016
26744312Hairy and Groucho mediate the action of juvenile hormone receptor Methoprene-tolerant in gene repression.Proc Natl Acad Sci U S A2016
27367556bioassayR: Cross-Target Analysis of Small Molecule Bioactivity.J Chem Inf Model2016
26822322A novel virus from Macrosiphum euphorbiae with similarities to members of the family Flaviviridae.J Gen Virol2016
27208254Transcriptomes of Eight Arabidopsis thaliana Accessions Reveal Core Conserved, Genotype- and Organ-Specific Responses to Flooding Stress.Plant Physiol2016
26621857Alcohol Consumption Modulates Host Defense in Rhesus Macaques by Altering Gene Expression in Circulating Leukocytes.J Immunol2016
27650223systemPipeR: NGS workflow and report generation environment.BMC Bioinformatics2016
27681124Acute Simian Varicella Virus Infection Causes Robust and Sustained Changes in Gene Expression in the Sensory Ganglia.J Virol2016
27677639Genomic and functional analysis of the host response to acute simian varicella infection in the lung.Sci Rep2016
26621857Alcohol Consumption Modulates Host Defense in Rhesus Macaques by Altering Gene Expression in Circulating Leukocytes.J Immunol2016
27677639Genomic and functional analysis of the host response to acute simian varicella infection in the lung.Sci Rep2016
27681124Acute Simian Varicella Virus Infection Causes Robust and Sustained Changes in Gene Expression in the Sensory Ganglia.J Virol2016
27650223systemPipeR: NGS workflow and report generation environment.BMC Bioinformatics2016
27208254Transcriptomes of Eight Arabidopsis thaliana Accessions Reveal Core Conserved, Genotype- and Organ-Specific Responses to Flooding Stress.Plant Physiol2016
27367556bioassayR: Cross-Target Analysis of Small Molecule Bioactivity.J Chem Inf Model2016
26744312Hairy and Groucho mediate the action of juvenile hormone receptor Methoprene-tolerant in gene repression.Proc Natl Acad Sci U S A2016
25633503Orchestrating high-throughput genomic analysis with Bioconductor.Nat Methods2015
25633503Orchestrating high-throughput genomic analysis with Bioconductor.Nat Methods2015
26274815Regulation of Gene Expression Patterns in Mosquito Reproduction.PLoS Genet2015
26274815Regulation of Gene Expression Patterns in Mosquito Reproduction.PLoS Genet2015
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Collaborators

Tao Jiang
University of California riverside
Co-authored papers 7
Tyler W H Backman
Lawrence Berkeley National Laboratory
Co-authored papers 7
Daniel S Evans
California Pacific Medical Center, Research Institute
Co-authored papers 4
Zhen Zou
Chinese Academy of Sciences
Co-authored papers 3
Daniel L Koller
Indiana University School of Medicine
Co-authored papers 2
Robert Luben
Co-authored papers 2
Dan Mellstr??m
University of Gothenburg
Co-authored papers 2
David A Bennett
Rush University Medical Center
Co-authored papers 2
Antti Jula
Co-authored papers 2
Liesbeth Vandenput
Mary McKillop Institute for Health Research, Australian Catholic University
Co-authored papers 2
Fernando Rivadeneira
University Medical Center Rotterdam
Co-authored papers 2
Toby Johnson
Co-authored papers 2
Alena Stančáková
Co-authored papers 2
Robert L Hanson
Co-authored papers 2
Nicholas J Schork
University of California San Diego
Co-authored papers 2
Richard A Miller
University of Michigan School of Medicine ann arbor
Co-authored papers 2
Tim D Spector
King's College London
Co-authored papers 2
Simon Melov
Buck Institute for Research on Aging
Co-authored papers 2
Michael R Erdos
Center for Precision Health Research, National Human Genome Research Institute
Co-authored papers 2
Laura J Scott
Co-authored papers 2
Jong-Young Lee
Co-authored papers 2
Bruce M Psaty
Co-authored papers 2
Melissa Garcia
Co-authored papers 2
Jian'an Luan
Co-authored papers 2
Samuli Ripatti
Co-authored papers 2
Ozren Polasek
Co-authored papers 2
Veikko Salomaa
Co-authored papers 2
Zolt??n Kutalik
University of Lausanne
Co-authored papers 2
Stephen C J Parker
University of Michigan ann arbor
Co-authored papers 2
Albert V Smith
University of Michigan School of Public Health ann arbor
Co-authored papers 2
Release 1.2