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Author Details

Ally Yang
University of Toronto
2008
28
17
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36662884A multimorphic mutation in IRF4 causes human autosomal dominant combined immunodeficiency.Sci Immunol2023
37557175Chromatin accessibility in the Drosophila embryo is determined by transcription factor pioneering and enhancer activation.Dev Cell2023
37552984An RFX transcription factor regulates ciliogenesis in the closest living relatives of animals.Curr Biol2023
37945377The human genome contains over a million autonomous exons.Genome Res2023
37086783Structural insights into DNA recognition by the BEN domain of the transcription factor BANP.J Biol Chem2023
35144965Distinct structural bases for sequence-specific DNA binding by mammalian BEN domain proteins.Genes Dev2022
33556623Crystal structure of the BRPF2 PWWP domain in complex with DNA reveals a different binding mode than the HDGF family of PWWP domains.Biochim Biophys Acta Gene Regul Mech2021
33561217Diverse Eukaryotic CGG-Binding Proteins Produced by Independent Domestications of hAT Transposons.Mol Biol Evol2021
32207815A bacteriophage mimic of the bacterial nucleoid-associated protein Fis.Biochem J2020
30487138Functional Analysis and Fine Mapping of the 9p22.2 Ovarian Cancer Susceptibility Locus.Cancer Res2019
31133749Similarity regression predicts evolution of transcription factor sequence specificity.Nat Genet2019
29217772The intracellular immune receptor Rx1 regulates the DNA-binding activity of a Golden2-like transcription factor.J Biol Chem2018
29801802Neurospora crassa developmental control mediated by the FLB-3 transcription factor.Fungal Biol2018
29567833Structural basis for the ability of MBD domains to bind methyl-CG and TG sites in DNA.J Biol Chem2018
29620523An incoherent feedforward loop facilitates adaptive tuning of gene expression.Elife2018
29276034DNA Sequence Recognition of Human CXXC Domains and Their Structural Determinants.Structure2018
28877740Non-base-contacting residues enable kaleidoscopic evolution of metazoan C2H2 zinc finger DNA binding.Genome Biol2017
27855160Transcription Factors Encoded on Core and Accessory Chromosomes of Fusarium oxysporum Induce Expression of Effector Genes.PLoS Genet2016
25690854C2H2 zinc finger proteins greatly expand the human regulatory lexicon.Nat Biotechnol2015
26068099A Novel AT-Rich DNA Recognition Mechanism for Bacterial Xenogeneic Silencer MvaT.PLoS Pathog2015
25905672Mapping and analysis of Caenorhabditis elegans transcription factor sequence specificities.Elife2015
24784729A novel C2H2 transcription factor that regulates gliA expression interdependently with GliZ in Aspergillus fumigatus.PLoS Genet2014
25220462Mapping and dynamics of regulatory DNA and transcription factor networks in A. thaliana.Cell Rep2014
25215497Determination and inference of eukaryotic transcription factor sequence specificity.Cell2014
23795294Temporal transcriptional response to ethylene gas drives growth hormone cross-regulation in Arabidopsis.Elife2013
24043797Early evolution of the T-box transcription factor family.Proc Natl Acad Sci U S A2013
23846655A compendium of RNA-binding motifs for decoding gene regulation.Nature2013
19111667A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters.Mol Cell2008
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Collaborators

Timothy R Hughes
University of Toronto
Co-authored papers 26
Matthew T Weirauch
University of Cincinnati College of Medicine
Co-authored papers 11
Sanie Mnaimneh
University of Toronto
Co-authored papers 5
Jinrong Min
Central China Normal University
Co-authored papers 4
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The Salk Institute for Biological Studies
Co-authored papers 2
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Icahn School of Medicine at Mount Sinai
Co-authored papers 2
Quaid Morris
Sloan Kettering Institute
Co-authored papers 2
Brendan J Frey
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Co-authored papers 2
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Van Andel Institute
Co-authored papers 1
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Memorial Sloan-Kettering Cancer Center
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Cardiovascular Research Institute
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Gary C Hon
Cecil H. and Ida Green Center for Reproductive Biology Sciences
Co-authored papers 1
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College of Health and Medicine, The Australian National University
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Altius Institute for Biomedical Sciences
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National Cancer Institute, National Institutes of Health
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University of Washington
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Marcin Adamski
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Ziv Bar-Joseph
Carnegie Mellon University
Co-authored papers 1
Altuna Akalin
Berlin Institute for Medical Systems Biology
Co-authored papers 1
Anshul Kundaje
Stanford University.
Co-authored papers 1
Ellen L Goode
Mayo Clinic College of Medicine
Co-authored papers 1
Robert E Thurman
University of Washington
Co-authored papers 1
Julia Zeitlinger
Stowers Institute for Medical Research, University of Kansas School of Medicine
Co-authored papers 1
Jason D Lieb
The University of Chicago
Co-authored papers 1
Joseph R Nery
The Salk Institute for Biological Studies
Co-authored papers 1
Molly Weaver
University of Kentucky
Co-authored papers 1
Debashish Ray
Co-authored papers 1
Katherine N Chang
The Salk Institute for Biological Studies
Co-authored papers 1
Susan J Ramus
School of Clinical Medicine, University of NSW Sydney, Lowy Cancer Research Centre
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Robert J Schmitz
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Release 1.2