Author details

Full Name

Keehyoung Joo

Affiliation

Center for Advanced Computation, Korea Institute for Advanced Study

ORCID

Career Start Year

2004

Papers

H Index

Expertise

CM4AI Collaborator

Andrej Sali (CM4AI)

PMID	Paper Title	Journal Title	Published Year
37995286	DeepFold: enhancing protein structure prediction through optimized loss functions, improved template features, and re-optimized energy function.	Bioinformatics	2023
37585026	Application of conformational space annealing to the protein structure modeling using cryo-EM maps.	J Comput Chem	2023
37995286	DeepFold: enhancing protein structure prediction through optimized loss functions, improved template features, and re-optimized energy function.	Bioinformatics	2023
37585026	Application of conformational space annealing to the protein structure modeling using cryo-EM maps.	J Comput Chem	2023
36257983	Direct experimental observation of blue-light-induced conformational change and intermolecular interactions of cryptochrome.	Commun Biol	2022
35744836	CRFalign: A Sequence-Structure Alignment of Proteins Based on a Combination of HMM-HMM Comparison and Conditional Random Fields.	Molecules	2022
36257983	Direct experimental observation of blue-light-induced conformational change and intermolecular interactions of cryptochrome.	Commun Biol	2022
35744836	CRFalign: A Sequence-Structure Alignment of Proteins Based on a Combination of HMM-HMM Comparison and Conditional Random Fields.	Molecules	2022
32244797	A Coil-to-Helix Transition Serves as a Binding Motif for hSNF5 and BAF155 Interaction.	Int J Mol Sci	2020
32244797	A Coil-to-Helix Transition Serves as a Binding Motif for hSNF5 and BAF155 Interaction.	Int J Mol Sci	2020
32001743	Supramolecular tholos-like architecture constituted by archaeal proteins without functional annotation.	Sci Rep	2020
31999919	Improved Consensus-Fragment Selection in Template-Assisted Prediction of Protein Structures with the UNRES Force Field in CASP13.	J Chem Inf Model	2020
32001743	Supramolecular tholos-like architecture constituted by archaeal proteins without functional annotation.	Sci Rep	2020
31999919	Improved Consensus-Fragment Selection in Template-Assisted Prediction of Protein Structures with the UNRES Force Field in CASP13.	J Chem Inf Model	2020
30500873	ConDo: protein domain boundary prediction using coevolutionary information.	Bioinformatics	2019
30500873	ConDo: protein domain boundary prediction using coevolutionary information.	Bioinformatics	2019
30699145	Non-sequential protein structure alignment by conformational space annealing and local refinement.	PLoS One	2019
30689864	CHARMM-GUI Glycan Modeler for modeling and simulation of carbohydrates and glycoconjugates.	Glycobiology	2019
30689864	CHARMM-GUI Glycan Modeler for modeling and simulation of carbohydrates and glycoconjugates.	Glycobiology	2019
30699145	Non-sequential protein structure alignment by conformational space annealing and local refinement.	PLoS One	2019
29159837	Protein structure modeling and refinement by global optimization in CASP12.	Proteins	2018
28975666	Methods for estimation of model accuracy in CASP12.	Proteins	2018
30250173	Morphological Evaluation of Meta-stable Oligomers of Î±-Synuclein with Small-Angle Neutron Scattering.	Sci Rep	2018
29860162	Use of the UNRES force field in template-assisted prediction of protein structures and the refinement of server models: Test with CASP12 targets.	J Mol Graph Model	2018
29341255	Data-assisted protein structure modeling by global optimization in CASP12.	Proteins	2018
29122686	An artificially constructed dimer through deformation of a short zinc-binding loop.	Biochim Biophys Acta Proteins Proteom	2018
29159837	Protein structure modeling and refinement by global optimization in CASP12.	Proteins	2018
29860162	Use of the UNRES force field in template-assisted prediction of protein structures and the refinement of server models: Test with CASP12 targets.	J Mol Graph Model	2018
30250173	Morphological Evaluation of Meta-stable Oligomers of Î±-Synuclein with Small-Angle Neutron Scattering.	Sci Rep	2018
29122686	An artificially constructed dimer through deformation of a short zinc-binding loop.	Biochim Biophys Acta Proteins Proteom	2018
29341255	Data-assisted protein structure modeling by global optimization in CASP12.	Proteins	2018
28975666	Methods for estimation of model accuracy in CASP12.	Proteins	2018
28714967	Architecture of the type IV coupling protein complex of Legionella pneumophila.	Nat Microbiol	2017
28940211	Ergodicity and model quality in template-restrained canonical and temperature/Hamiltonian replica exchange coarse-grained molecular dynamics simulations of proteins.	J Comput Chem	2017
28714967	Architecture of the type IV coupling protein complex of Legionella pneumophila.	Nat Microbiol	2017
28398048	Protein Loop Structure Prediction Using Conformational Space Annealing.	J Chem Inf Model	2017
28398048	Protein Loop Structure Prediction Using Conformational Space Annealing.	J Chem Inf Model	2017
28940211	Ergodicity and model quality in template-restrained canonical and temperature/Hamiltonian replica exchange coarse-grained molecular dynamics simulations of proteins.	J Comput Chem	2017
27215198	Crystal Structure of Hypothetical Fructose-Specific EIIB from Escherichia coli.	Mol Cells	2016
27215198	Crystal Structure of Hypothetical Fructose-Specific EIIB from Escherichia coli.	Mol Cells	2016
27122118	Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.	Proteins	2016
26474186	Template-free modeling by LEE and LEER in CASP11.	Proteins	2016
26329522	Template based protein structure modeling by global optimization in CASP11.	Proteins	2016
26677100	Contact-assisted protein structure modeling by global optimization in CASP11.	Proteins	2016
27749055	Use of Restraints from Consensus Fragments of Multiple Server Models To Enhance Protein-Structure Prediction Capability of the UNRES Force Field.	J Chem Inf Model	2016
26329522	Template based protein structure modeling by global optimization in CASP11.	Proteins	2016
26474186	Template-free modeling by LEE and LEER in CASP11.	Proteins	2016
26677100	Contact-assisted protein structure modeling by global optimization in CASP11.	Proteins	2016
27749055	Use of Restraints from Consensus Fragments of Multiple Server Models To Enhance Protein-Structure Prediction Capability of the UNRES Force Field.	J Chem Inf Model	2016
27122118	Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.	Proteins	2016

1 - 50 of 98

Neeladri Sen

Institute of Structural and Molecular Biology, University College London

Career Start Year 2017

Number of shared co-authors 4

Chengxin Zhang

University of Michigan ann arbor

Career Start Year 2017

Number of shared co-authors 6

Renzhi Cao

Pacific Lutheran University

Career Start Year 2013

Number of shared co-authors 12

Daniel B Roche

Universita degli Studi di Milano - Computer Science Department - AnacletoLab

Career Start Year 2010

Number of shared co-authors 6

Juergen Haas

University of Basel

Career Start Year 2007

Number of shared co-authors 4

Jaume Bonet

Institute of Bioengineering, Ecole Polytechnique Federale de Lausanne

Career Start Year 2006

Number of shared co-authors 8

Frank DiMaio

University of Washington

Career Start Year 2006

Number of shared co-authors 14

Jinbo Xu

Toyota Technological Institute at Chicago

Career Start Year 2003

Number of shared co-authors 0

Yang Zhang

University of Michigan ann arbor

Career Start Year 2002

Number of shared co-authors 15

Hao Fan

College of Biotechnology and Bioengineering, Zhejiang University of Technology

Career Start Year 2001

Number of shared co-authors 2

Maya Topf

Leibniz-Institut fur Virologie (LIV)

Career Start Year 2001

Number of shared co-authors 4

Torsten Schwede

University of Basel

Career Start Year 1999

Number of shared co-authors 21

Peter W Rose

University of California

Career Start Year 1999

Number of shared co-authors 6

Heather A Carlson

University of Michigan ann arbor

Career Start Year 1999

Number of shared co-authors 1

Daron M Standley

Osaka university

Career Start Year 1998

Number of shared co-authors 41

Nikolay V Dokholyan

Pennsylvania State University College of Medicine

Career Start Year 1998

Number of shared co-authors 4

Mallur S Madhusudhan

Indian Institute of Science Education and Research Pune

Career Start Year 1996

Number of shared co-authors 2

Paul D Adams

Lawrence Berkeley National Laboratory

Career Start Year 1994

Number of shared co-authors 9

Haim J Wolfson

Tel Aviv University

Career Start Year 1991

Number of shared co-authors 36

Ram Samudrala

Jacobs School of Medicine and Biomedical Sciences, University at Buffalo

Career Start Year 1990

Number of shared co-authors 2

Carlos J Camacho

University of Pittsburgh

Career Start Year 1990

Number of shared co-authors 23

Roland L Dunbrack

Fox Chase Cancer Center

Career Start Year 1989

Number of shared co-authors 25

Krzysztof Fidelis

University of California davis

Career Start Year 1987

Number of shared co-authors 5

Randy J Read

Cambridge Institute for Medical Research, University of Cambridge

Career Start Year 1982

Number of shared co-authors 7

Ruben Abagyan

Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California

Career Start Year 1981

Number of shared co-authors 3

Haruki Nakamura

Institute for Protein Research, Osaka University

Career Start Year 1980

Number of shared co-authors 41

John Moult

Institute for Bioscience and Biotechnology Research

Career Start Year 1970

Number of shared co-authors 8

Michael Levitt

Stanford University

Career Start Year 1969

Number of shared co-authors 12

Andras Fiser

Albert Einstein College of Medicine

Career Start Year 1968

Number of shared co-authors 6

Jens Meiler

Vanderbilt University

Career Start Year 1954

Number of shared co-authors 10

row(s) 1 - 30 of 30

Jooyoung Lee

Korea Institute for Advanced Study

Co-authored papers 47

PaweÅ¿ Krupa

Co-authored papers 5

Magdalena A Mozolewska

Co-authored papers 5

Cezary Czaplewski

Co-authored papers 5

Adam Liwo

Co-authored papers 5

Jong Yun Kim

Chonnam National University

Co-authored papers 5

Sun Young Lee

Chonbuk National University Hospital

Co-authored papers 4

Agnieszka KarczyÅ¿ska

Co-authored papers 3

David Baker

University of Washington

Co-authored papers 2

Jianlin Cheng

University of Missouri

Co-authored papers 2

Chaok Seok

Seoul National University

Co-authored papers 2

Jong Young Joung

Korea Institute for Advanced Study

Co-authored papers 2

Zhiping Weng

University of Massachusetts Medical School

Co-authored papers 1

Petras J Kundrotas

The University of Kansas

Co-authored papers 1

Eiichiro Ichiishi

International University of Health and Welfare (IUHV Hospital)

Co-authored papers 1

Anisah W Ghoorah

University of Mauritius

Co-authored papers 1

Neil J Bruce

Heidelberg Institute for Theoretical Studies (HITS)

Co-authored papers 1

Zhiwei Ma

Dalton Cardiovascular Research Center, University of Missouri

Co-authored papers 1

Dmitri Beglov

Boston University

Co-authored papers 1

Jin Young Lee

Samsung Medical Center, College of Medicine, The Sungkyunkwan University of Korea

Co-authored papers 1

Liming Qiu

Perelman School of Medicine, University of Pennsylvania

Co-authored papers 1

Artem B Mamonov

MGH/Harvard Medical School

Co-authored papers 1

Brian Jim??nez-Garc??a

Utrecht University

Co-authored papers 1

Iain H Moal

GSK Medicines Research Centre

Co-authored papers 1

Rebecca C Wade

Center for Molecular Biology (ZMBH), Heidelberg University

Co-authored papers 1

Bernard Maigret

Universite de Lorraine, CNRS

Co-authored papers 1

Gydo C P van Zundert

Utrecht University

Co-authored papers 1

Li C Xue

Utrecht University

Co-authored papers 1

Xiaoqin Zou

Dalton Cardiovascular Research Center, University of Missouri

Co-authored papers 1

Ilya A Vakser

The University of Kansas

Co-authored papers 1

1 - 30

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