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Author Details

Tunca Do??an
Hacettepe University
2013
25
10
PMIDPaper TitleJournal TitlePublished Year
36736370ProFAB-open protein functional annotation benchmark.Brief Bioinform2023
37822561ASCARIS: Positional feature annotation and protein structure-based representation of single amino acid variations.Comput Struct Biotechnol J2023
37387156Transfer learning for drug-target interaction prediction.Bioinformatics2023
37337100Democratizing knowledge representation with BioCypher.Nat Biotechnol2023
36747300How to approach machine learning-based prediction of drug/compound-target interactions.J Cheminform2023
36444655Machine learning-based prediction of drug approvals using molecular, physicochemical, clinical trial, and patent-related features.Expert Opin Drug Discov2022
35801913SLPred: a multi-view subcellular localization prediction tool for multi-location human proteins.Bioinformatics2022
33067636MDeePred: novel multi-channel protein featurization for deep learning-based binding affinity prediction in drug discovery.Bioinformatics2021
34910274Data Centric Molecular Analysis and Evaluation of Hepatocellular Carcinoma Therapeutics Using Machine Intelligence-Based Tools.J Gastrointest Cancer2021
34926587Editorial: Machine Learning Methodologies to Study Molecular Interactions.Front Mol Biosci2021
34843456Protein domain-based prediction of drug/compound-target interactions and experimental validation on LIM kinases.PLoS Comput Biol2021
34181736CROssBAR: comprehensive resource of biomedical relations with knowledge graph representations.Nucleic Acids Res2021
33094316iBioProVis: interactive visualization and analysis of compound bioactivity space.Bioinformatics2020
31089211DEEPred: Automated Protein Function Prediction with Multi-task Feed-forward Deep Neural Networks.Sci Rep2019
31744546The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens.Genome Biol2019
30084866Recent applications of deep learning and machine intelligence on in silico drug discovery: methods, tools and databases.Brief Bioinform2019
29098713Large-scale automated function prediction of protein sequences and an experimental case study validation on PTEN transcript variants.Proteins2018
30241466ECPred: a tool for the prediction of the enzymatic functions of protein sequences based on the EC nomenclature.BMC Bioinformatics2018
29852872A Structural Perspective on the Modulation of Protein-Protein Interactions with Small Molecules.Curr Top Med Chem2018
30083448HPO2GO: prediction of human phenotype ontology term associations for proteins using cross ontology annotation co-occurrences.PeerJ2018
29594767Phylogenetic and Other Conservation-Based Approaches to Predict Protein Functional Sites.Methods Mol Biol2018
27153729UniProt-DAAC: domain architecture alignment and classification, a new method for automatic functional annotation in UniProtKB.Bioinformatics2016
26538599Tools and data services registry: a community effort to document bioinformatics resources.Nucleic Acids Res2016
27604469An expanded evaluation of protein function prediction methods shows an improvement in accuracy.Genome Biol2016
24069417Automatic identification of highly conserved family regions and relationships in genome wide datasets including remote protein sequences.PLoS One2013
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Collaborators

Maria J Martin
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 12
Rengul Cetin-Atalay
Middle East Technical University
Co-authored papers 12
Volkan Atalay
Middle East Technical University
Co-authored papers 12
Ahmet Sureyya Rifaioglu
Iskenderun Technical University
Co-authored papers 11
Rabie Saidi
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 5
Giuseppe Profiti
University of Bologna
Co-authored papers 3
Silvio C E Tosatto
University of Padova
Co-authored papers 3
Tatyana Goldberg
TUM (Technical University of Munich) Department of Informatics
Co-authored papers 3
Claire O'Donovan
European Bioinformatics Institute
Co-authored papers 3
Rita Casadio
Department of Pharmacy and Biotechnology, University of Bologna
Co-authored papers 3
Burkhard Rost
Technical University of Munich (TUM)
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Prajwal Bhat
Royal Holloway University of London
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Richard Bonneau
Center for Computational Biology (CCB), Flatiron Institute, Simons Foundation
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Nevena Veljkovic
Heliant Ltd
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Branislava Gemovic
Vinca Institute of Nuclear Sciences, University of Belgrade
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Iddo Friedberg
Iowa State University
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David T Jones
University College London
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Filip Ginter
University of Turku
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Steven E Brenner
University of California berkeley
Co-authored papers 2
Jos?? M Fern??ndez
Hospital Universitario y Politecnico la Fe
Co-authored papers 2
Renzhi Cao
Pacific Lutheran University
Co-authored papers 2
Indika Kahanda
University of North Florida
Co-authored papers 2
Sayoni Das
University College London
Co-authored papers 2
Matteo Re
Universita degli Studi di Milano
Co-authored papers 2
Alfredo Benso
Italy Consorzio Interuniversitario Nazionale per l'Informatica
Co-authored papers 2
Alperen Dalkiran
Middle East Technical University (METU)
Co-authored papers 2
Kai Hakala
University of Turku
Co-authored papers 2
Christophe Dessimoz
University of Lausanne
Co-authored papers 2
Domenico Cozzetto
Imperial College London
Co-authored papers 2
Marco Mesiti
Universita degli Studi di Milano
Co-authored papers 2
Release 1.2