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Author Details

Yunjiang Qiu
Ludwig Institute for Cancer Research, University of California
2015
27
19
PMIDPaper TitleJournal TitlePublished Year
36945429A deep population reference panel of tandem repeat variation.bioRxiv2023
37872149A deep population reference panel of tandem repeat variation.Nat Commun2023
36945429A deep population reference panel of tandem repeat variation.bioRxiv2023
37872149A deep population reference panel of tandem repeat variation.Nat Commun2023
35948990REViewer: haplotype-resolved visualization of read alignments in and around tandem repeats.Genome Med2022
35948990REViewer: haplotype-resolved visualization of read alignments in and around tandem repeats.Genome Med2022
35613278The Hippo pathway mediates Semaphorin signaling.Sci Adv2022
36778047Type 1 diabetes risk genes mediate pancreatic beta cell survival in response to proinflammatory cytokines.Cell Genom2022
35613278The Hippo pathway mediates Semaphorin signaling.Sci Adv2022
36778047Type 1 diabetes risk genes mediate pancreatic beta cell survival in response to proinflammatory cytokines.Cell Genom2022
33398137Author Correction: An atlas of dynamic chromatin landscapes in mouse fetal development.Nature2021
33795864Single-cell chromatin accessibility identifies pancreatic islet cell type- and state-specific regulatory programs of diabetes risk.Nat Genet2021
33509077Inferring time series chromatin states for promoter-enhancer pairs based on Hi-C data.BMC Genomics2021
33505025Systematic analysis of binding of transcription factors to noncoding variants.Nature2021
33398137Author Correction: An atlas of dynamic chromatin landscapes in mouse fetal development.Nature2021
34789735Sequence logic at enhancers governs a dual mechanism of endodermal organ fate induction by FOXA pioneer factors.Nat Commun2021
34616068An atlas of gene regulatory elements in adult mouse cerebrum.Nature2021
34774128A single-cell atlas of chromatin accessibility in the human genome.Cell2021
33795864Single-cell chromatin accessibility identifies pancreatic islet cell type- and state-specific regulatory programs of diabetes risk.Nat Genet2021
33509077Inferring time series chromatin states for promoter-enhancer pairs based on Hi-C data.BMC Genomics2021
33505025Systematic analysis of binding of transcription factors to noncoding variants.Nature2021
34616068An atlas of gene regulatory elements in adult mouse cerebrum.Nature2021
34789735Sequence logic at enhancers governs a dual mechanism of endodermal organ fate induction by FOXA pioneer factors.Nat Commun2021
34774128A single-cell atlas of chromatin accessibility in the human genome.Cell2021
33037424Author Correction: An atlas of dynamic chromatin landscapes in mouse fetal development.Nature2020
33037424Author Correction: An atlas of dynamic chromatin landscapes in mouse fetal development.Nature2020
31064983Pancreatic islet chromatin accessibility and conformation reveals distal enhancer networks of type 2 diabetes risk.Nat Commun2019
31779666Common DNA sequence variation influences 3-dimensional conformation of the human genome.Genome Biol2019
30986246MAPS: Model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments.PLoS Comput Biol2019
31427791Transcriptionally active HERV-H retrotransposons demarcate topologically associating domains in human pluripotent stem cells.Nat Genet2019
31064983Pancreatic islet chromatin accessibility and conformation reveals distal enhancer networks of type 2 diabetes risk.Nat Commun2019
30778236Dynamic reorganization of the genome shapes the recombination landscape in meiotic prophase.Nat Struct Mol Biol2019
31779666Common DNA sequence variation influences 3-dimensional conformation of the human genome.Genome Biol2019
31427791Transcriptionally active HERV-H retrotransposons demarcate topologically associating domains in human pluripotent stem cells.Nat Genet2019
30986246MAPS: Model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments.PLoS Comput Biol2019
30778236Dynamic reorganization of the genome shapes the recombination landscape in meiotic prophase.Nat Struct Mol Biol2019
29313530Histone H3 lysine 4 monomethylation modulates long-range chromatin interactions at enhancers.Cell Res2018
30135582RAP2 mediates mechanoresponses of the Hippo pathway.Nature2018
29497152Histone H3 lysine 4 monomethylation modulates long-range chromatin interactions at enhancers.Cell Res2018
29802201The Hippo pathway effector proteins YAP and TAZ have both distinct and overlapping functions in the cell.J Biol Chem2018
29313530Histone H3 lysine 4 monomethylation modulates long-range chromatin interactions at enhancers.Cell Res2018
30135582RAP2 mediates mechanoresponses of the Hippo pathway.Nature2018
29802201The Hippo pathway effector proteins YAP and TAZ have both distinct and overlapping functions in the cell.J Biol Chem2018
29497152Histone H3 lysine 4 monomethylation modulates long-range chromatin interactions at enhancers.Cell Res2018
28417999A tiling-deletion-based genetic screen for cis-regulatory element identification in mammalian cells.Nat Methods2017
28417999A tiling-deletion-based genetic screen for cis-regulatory element identification in mammalian cells.Nat Methods2017
27851967A Compendium of Chromatin Contact Maps Reveals Spatially Active Regions in the Human Genome.Cell Rep2016
27851967A Compendium of Chromatin Contact Maps Reveals Spatially Active Regions in the Human Genome.Cell Rep2016
25505163A common set of distinct features that characterize noncoding RNAs across multiple species.Nucleic Acids Res2015
25693566Integrative analysis of haplotype-resolved epigenomes across human tissues.Nature2015
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Collaborators

Bing Ren
Center for Epigenomics, University of California San Diego
Co-authored papers 21
Joshua Chiou
Co-authored papers 10
Kyle J Gaulton
Co-authored papers 10
Sebastian Preissl
Center for Epigenomics, University of California San Diego
Co-authored papers 9
Maike Sander
Co-authored papers 7
David U Gorkin
Center for Epigenomics, University of California San Diego
Co-authored papers 6
Rongxin Fang
Ludwig Institute for Cancer Research, University of California San Diego
Co-authored papers 5
Jian Yan
Co-authored papers 5
Jee Yun Han
Co-authored papers 5
Zhen Ye
Ludwig Institute for Cancer Research, University of California San Diego
Co-authored papers 5
Allen Wang
Center for Epigenomics, University of California San Diego School of Medicine
Co-authored papers 4
Bin Li
Co-authored papers 4
Kimberly C Lin
University of California san francisco
Co-authored papers 4
Yin Shen
Wenzhou Medical University
Co-authored papers 4
Hui Huang
Co-authored papers 4
Yanxiao Zhang
Co-authored papers 4
Joseph R Ecker
The Salk Institute for Biological Studies
Co-authored papers 4
Sora Chee
Co-authored papers 4
Kun-Liang Guan
University of California San Diego
Co-authored papers 4
Ah Young Lee
Co-authored papers 4
Yuan Zhao
Co-authored papers 3
Inkyung Jung
Co-authored papers 3
Anthony D Schmitt
Co-authored papers 3
Mei-Lin Okino
Co-authored papers 3
Yarui Diao
Duke University Medical Center
Co-authored papers 3
Kelly A Frazer
University of California, USA Institute for Genomic Medicine
Co-authored papers 3
Zhipeng Meng
University of Miami Miller School of Medicine
Co-authored papers 3
Naoki Nariai
Co-authored papers 3
Elizabeth A Lee
Co-authored papers 2
J Seth Strattan
Co-authored papers 2
Release 1.2