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Author Details

Katherine Licon
University of California San Diego
2008
21
17
Dexter Pratt (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37220749A multi-scale map of protein assemblies in the DNA damage response.Cell Syst2023
34819669A multi-scale map of cell structure fusing protein images and interactions.Nature2021
34591613Interpretation of cancer mutations using a multiscale map of protein systems.Science2021
32619550Quantitative Translation of Dog-to-Human Aging by Conserved Remodeling of the DNA Methylome.Cell Syst2020
32732306Genome-Wide Dynamic Evaluation of the UV-Induced DNA Damage Response.G3 (Bethesda)2020
31602605Ultrahigh-Density Screens for Genome-Wide Yeast EMAPs in a Single Plate.Methods Mol Biol2019
29610481A global transcriptional network connecting noncoding mutations to changes in tumor gene expression.Nat Genet2018
29636367Disruption of <i>NSD1</i> in Head and Neck Cancer Promotes Favorable Chemotherapeutic Responses Linked to Hypomethylation.Mol Cancer Ther2018
28319113Combinatorial CRISPR-Cas9 screens for de novo mapping of genetic interactions.Nat Methods2017
28132844Active Interaction Mapping Reveals the Hierarchical Organization of Autophagy.Mol Cell2017
26949740Translation of Genotype to Phenotype by a Hierarchy of Cell Subsystems.Cell Syst2016
27453043A Network of Conserved Synthetic Lethal Interactions for Exploration of Precision Cancer Therapy.Mol Cell2016
27105112Methylome-wide Analysis of Chronic HIV Infection Reveals Five-Year Increase in Biological Age and Epigenetic Targeting of HLA.Mol Cell2016
26437225Chemogenetic profiling identifies RAD17 as synthetically lethal with checkpoint kinase inhibition.Oncotarget2015
23291096Decoupling epigenetic and genetic effects through systematic analysis of gene position.Cell Rep2013
24360959A UV-induced genetic network links the RSC complex to nucleotide excision repair and shows dose-dependent rewiring.Cell Rep2013
22837534Subnetwork-based analysis of chronic lymphocytic leukemia identifies pathways that associate with disease progression.Blood2012
20978140Coevolution within a transcriptional network by compensatory trans and cis mutations.Genome Res2010
21127252Rewiring of genetic networks in response to DNA damage.Science2010
19297025Validation of reference genes for quantitative measurement of immune gene expression in shrimp.Mol Immunol2009
17945355Detection and quantification of infectious hematopoietic necrosis virus in rainbow trout (Oncorhynchus mykiss) by SYBR Green real-time reverse transcriptase-polymerase chain reaction.J Virol Methods2008
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Collaborators

Trey Ideker (CM4AI)
University of California San Diego
Co-authored papers 19
Jason F Kreisberg
University of California San Diego
Co-authored papers 9
John Paul Shen
The University of Texas MD Anderson Cancer Center
Co-authored papers 6
Ana Bojorquez-Gomez
University of California
Co-authored papers 5
Nevan J Krogan (CM4AI)
University of California San Francisco
Co-authored papers 5
Michael Ku Yu
University of California San Diego
Co-authored papers 4
Haico van Attikum
Leiden University Medical Center
Co-authored papers 4
Rohith Srivas
Amgen Inc.
Co-authored papers 4
Kyle S Sanchez
University of California San Diego
Co-authored papers 3
Jianfeng Li
Mitchell Cancer Institute, University of South Alabama
Co-authored papers 3
Kristin Klepper
University of California San Diego
Co-authored papers 3
Keiichiro Ono
university of california san diego
Co-authored papers 3
Marcus R Kelly
Stanford University School of Medicine
Co-authored papers 3
Su Ming Sun
Leiden University Medical Center
Co-authored papers 3
Justin K Huang
The University of Texas MD Anderson Cancer Center
Co-authored papers 3
Robert W Sobol
University of South Alabama
Co-authored papers 3
Jisoo Park
University of California San Diego san francisco
Co-authored papers 3
Fan Zheng
University of California San Diego
Co-authored papers 3
Daniel Pekin
University of California
Co-authored papers 3
Andrew M Gross
Illumina Inc.
Co-authored papers 3
Tina Wang
Harvard University
Co-authored papers 2
Alex N Beckett
St Jude Children's Research Hospital
Co-authored papers 2
Jing Chen
College of Bioinformatics Science and Technology, Harbin Medical University
Co-authored papers 2
Cherie T Ng
The Scripps Research Institute
Co-authored papers 2
Janusz Dutkowski
Data4Cure Inc.
Co-authored papers 2
Dexter Pratt (CM4AI)
UC San Diego
Co-authored papers 2
John Lee
University of California San Diego
Co-authored papers 2
Jia L Xu
Stem Cell Program and Institute for Genomic Medicine, University of California
Co-authored papers 2
Sourav Bandyopadhyay
University of California San Francisco
Co-authored papers 2
Eric J Jaehnig
Baylor College of Medicine
Co-authored papers 2
Release 1.2