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Author Details

Sarath Chandra Janga
Indiana University
2004
115
33
Jake Y. Chen (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36752040Experimental and computational methods for studying the dynamics of RNA-RNA interactions in SARS-COV2 genomes.Brief Funct Genomics2024
37918549Revelation of genetic diversity and genomic footprints of adaptation in Indian pig breeds.Gene2024
36752040Experimental and computational methods for studying the dynamics of RNA-RNA interactions in SARS-COV2 genomes.Brief Funct Genomics2024
37918549Revelation of genetic diversity and genomic footprints of adaptation in Indian pig breeds.Gene2024
36723813Sequoia: A Framework for Visual Analysis of RNA Modifications from Direct RNA Sequencing Data.Methods Mol Biol2023
37845620Read-depth based approach on whole genome resequencing data reveals important insights into the copy number variation (CNV) map of major global buffalo breeds.BMC Genomics2023
37986799Inflammation primes the kidney for recovery by activating AZIN1 A-to-I editing.bioRxiv2023
36723813Sequoia: A Framework for Visual Analysis of RNA Modifications from Direct RNA Sequencing Data.Methods Mol Biol2023
37845620Read-depth based approach on whole genome resequencing data reveals important insights into the copy number variation (CNV) map of major global buffalo breeds.BMC Genomics2023
37986799Inflammation primes the kidney for recovery by activating AZIN1 A-to-I editing.bioRxiv2023
35236300CASowary: CRISPR-Cas13 guide RNA predictor for transcript depletion.BMC Genomics2022
36048827A Putative long-range RNA-RNA interaction between ORF8 and Spike of SARS-CoV-2.PLoS One2022
35749515FOXP3 exon 2 controls T<sub>reg</sub> stability and autoimmunity.Sci Immunol2022
36425113Combining transfer learning with retinal lesion features for accurate detection of diabetic retinopathy.Front Med (Lausanne)2022
36548245Epitranscriptomics in parasitic protists: Role of RNA chemical modifications in posttranscriptional gene regulation.PLoS Pathog2022
35236300CASowary: CRISPR-Cas13 guide RNA predictor for transcript depletion.BMC Genomics2022
35182749Penguin: A tool for predicting pseudouridine sites in direct RNA nanopore sequencing data.Methods2022
35149653Esophageal Microbiome in Healthy Children and Esophageal Eosinophilia.J Pediatr Gastroenterol Nutr2022
35749515FOXP3 exon 2 controls T<sub>reg</sub> stability and autoimmunity.Sci Immunol2022
36548245Epitranscriptomics in parasitic protists: Role of RNA chemical modifications in posttranscriptional gene regulation.PLoS Pathog2022
36425113Combining transfer learning with retinal lesion features for accurate detection of diabetic retinopathy.Front Med (Lausanne)2022
36048827A Putative long-range RNA-RNA interaction between ORF8 and Spike of SARS-CoV-2.PLoS One2022
35182749Penguin: A tool for predicting pseudouridine sites in direct RNA nanopore sequencing data.Methods2022
35149653Esophageal Microbiome in Healthy Children and Esophageal Eosinophilia.J Pediatr Gastroenterol Nutr2022
32893479A long non-coding RNA (Lrap) modulates brain gene expression and levels of alcohol consumption in rats.Genes Brain Behav2021
34233619Sequoia: an interactive visual analytics platform for interpretation and feature extraction from nanopore sequencing datasets.BMC Genomics2021
34039271Lantern: an integrative repository of functional annotations for lncRNAs in the human genome.BMC Bioinformatics2021
33441968Transcriptome-wide high-throughput mapping of protein-RNA occupancy profiles using POP-seq.Sci Rep2021
32620324New Twists in Detecting mRNA Modification Dynamics.Trends Biotechnol2021
32893479A long non-coding RNA (Lrap) modulates brain gene expression and levels of alcohol consumption in rats.Genes Brain Behav2021
34576690Mutational Landscape and Interaction of SARS-CoV-2 with Host Cellular Components.Microorganisms2021
34976008Geographical Landscape and Transmission Dynamics of SARS-CoV-2 Variants Across India: A Longitudinal Perspective.Front Genet2021
34583937Comparative Analysis of Alternative Splicing Profiles in Th Cell Subsets Reveals Extensive Cell Type-Specific Effects Modulated by a Network of Transcription Factors and RNA-Binding Proteins.Immunohorizons2021
34976008Geographical Landscape and Transmission Dynamics of SARS-CoV-2 Variants Across India: A Longitudinal Perspective.Front Genet2021
34583937Comparative Analysis of Alternative Splicing Profiles in Th Cell Subsets Reveals Extensive Cell Type-Specific Effects Modulated by a Network of Transcription Factors and RNA-Binding Proteins.Immunohorizons2021
34576690Mutational Landscape and Interaction of SARS-CoV-2 with Host Cellular Components.Microorganisms2021
34039271Lantern: an integrative repository of functional annotations for lncRNAs in the human genome.BMC Bioinformatics2021
34233619Sequoia: an interactive visual analytics platform for interpretation and feature extraction from nanopore sequencing datasets.BMC Genomics2021
33441968Transcriptome-wide high-throughput mapping of protein-RNA occupancy profiles using POP-seq.Sci Rep2021
32620324New Twists in Detecting mRNA Modification Dynamics.Trends Biotechnol2021
32127575Embryonic ethanol exposure alters expression of sox2 and other early transcripts in zebrafish, producing gastrulation defects.Sci Rep2020
32127575Embryonic ethanol exposure alters expression of sox2 and other early transcripts in zebrafish, producing gastrulation defects.Sci Rep2020
32179158Bcl6 and Blimp1 reciprocally regulate ST2<sup>+</sup> Treg-cell development in the context of allergic airway inflammation.J Allergy Clin Immunol2020
32041821A Circular RNA from the <i>MDM2</i> Locus Controls Cell Cycle Progression by Suppressing p53 Levels.Mol Cell Biol2020
32993015Role of SARS-CoV-2 in Altering the RNA-Binding Protein and miRNA-Directed Post-Transcriptional Regulatory Networks in Humans.Int J Mol Sci2020
32985505STAT5 promotes accessibility and is required for BATF-mediated plasticity at the Il9 locus.Nat Commun2020
32809971Granzyme A-producing T helper cells are critical for acute graft-versus-host disease.JCI Insight2020
32579941Targeting Bim via a lncRNA Morrbid Regulates the Survival of Preleukemic and Leukemic Cells.Cell Rep2020
32676599Role of SARS-CoV-2 in altering the RNA binding protein and miRNA directed post-transcriptional regulatory networks in humans.bioRxiv2020
33108271The S-phase-induced lncRNA <i>SUNO1</i> promotes cell proliferation by controlling YAP1/Hippo signaling pathway.Elife2020
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Collaborators

Madan Mohan Babu
St. Jude Children's Research Hospital
Co-authored papers 6
Yuelin J Zhu
National Cancer Institute, National Institutes of Health
Co-authored papers 3
Sophie Paczesny
Hollings Cancer Center, Medical University of South Carolina
Co-authored papers 3
Denis Thieffry
Institut de Biologie de l'Ecole Normale Superieure, Inserm, CNRS, Universite PSL
Co-authored papers 1
Yaoqi Zhou
Co-authored papers 1
Andrey Korshunov
Institute of Pathology, University Hospital Heidelberg
Co-authored papers 1
Tarek M El-Achkar
Co-authored papers 1
Marc Remke
and Clinical Immunology, Heinrich Heine University, University Hospital Dusseldorf
Co-authored papers 1
David A Stahl
University of Washington
Co-authored papers 1
Ashkan Golshani
Ottawa Institute of Systems Biology, Carleton University
Co-authored papers 1
Sven Diederichs
Medical Center - University of Freiburg, University of Freiburg
Co-authored papers 1
Peter Wong
Co-authored papers 1
Kotb Abdelmohsen
National Institute on Aging, National Institutes of Health
Co-authored papers 1
Wenhong Yang
Lawrence Berkeley National Laboratory
Co-authored papers 1
Boris Tabakoff
University of Colorado Health Science Center
Co-authored papers 1
Stefan M Pfister
Hopp Children's Cancer Center Heidelberg (KiTZ)
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Ana Pombo
Polytechnic Institute of Leiria
Co-authored papers 1
Allyson L Lister
Oxford e-Research Centre, University of Oxford
Co-authored papers 1
Bobak D Kechavarzi
Indiana University Purdue University Indianapolis
Co-authored papers 1
Paula L Hoffman
University of Colorado
Co-authored papers 1
Jian Ma
Co-authored papers 1
Andrew Emili
Boston University School of Medicine, Boston University
Co-authored papers 1
Simon Anders
Heidelberg University
Co-authored papers 1
Jake Y Chen
Co-authored papers 1
Tae Hoon Kim
Co-authored papers 1
Yuedong Yang
Co-authored papers 1
Xinghua Guo
University of Toronto, College Street
Co-authored papers 1
Wolfgang Huber
Technische Universitat Munchen
Co-authored papers 1
Manuel Corpas
Co-authored papers 1
Jack F Greenblatt
College Street, University of Toronto
Co-authored papers 1
Release 1.2