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Author Details

Miguel Vazquez
Norwegian University of Science and Technology
2008
37
18
PMIDPaper TitleJournal TitlePublished Year
34875418ExTRI: Extraction of transcription regulation interactions from literature.Biochim Biophys Acta Gene Regul Mech2022
34664389COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms.Mol Syst Biol2021
33743482Immune analysis of lymph nodes in relation to the presence or absence of tumor infiltrating lymphocytes in triple-negative breast cancer.Eur J Cancer2021
33609721Longitudinal whole-exome sequencing of cell-free DNA for tracking the co-evolutionary tumor and immune evasion dynamics: longitudinal data from a single patient.Ann Oncol2021
34939300COVID-19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms.Mol Syst Biol2021
32610166Neoantigen prediction and computational perspectives towards clinical benefit: recommendations from the ESMO Precision Medicine Working Group.Ann Oncol2020
33195403A Middle-Out Modeling Strategy to Extend a Colon Cancer Logical Model Improves Drug Synergy Predictions in Epithelial-Derived Cancer Cell Lines.Front Mol Biosci2020
32636365A user guide for the online exploration and visualization of PCAWG data.Nat Commun2020
32848834Strategies to Enhance Logic Modeling-Based Cell Line-Specific Drug Synergy Prediction.Front Physiol2020
31622330Patient Dossier: Healthcare queries over distributed resources.PLoS Comput Biol2019
28549153ChiPPI: a novel method for mapping chimeric protein-protein interactions uncovers selection principles of protein fusion events in cancer.Nucleic Acids Res2017
28444126CImbinator: a web-based tool for drug synergy analysis in small- and large-scale datasets.Bioinformatics2017
27103312Somatic Embryonic FGFR2 Mutations in Keratinocytic Epidermal Nevi.J Invest Dermatol2016
26443060wKinMut-2: Identification and Interpretation of Pathogenic Variants in Human Protein Kinases.Hum Mutat2016
27357839KinMutRF: a random forest classifier of sequence variants in the human protein kinase superfamily.BMC Genomics2016
27542845The Markyt visualisation, prediction and benchmark platform for chemical and gene entity recognition at BioCreative/CHEMDNER challenge.Database (Oxford)2016
25740935Drosophila muller f elements maintain a distinct set of genomic properties over 40 million years of evolution.G3 (Bethesda)2015
26125594Pathway and network analysis of cancer genomes.Nat Methods2015
25765346Structure-PPi: a module for the annotation of cancer-related single-nucleotide variants at protein-protein interfaces.Bioinformatics2015
25810773The CHEMDNER corpus of chemicals and drugs and its annotation principles.J Cheminform2015
25810766CHEMDNER: The drugs and chemical names extraction challenge.J Cheminform2015
24227678CheNER: chemical named entity recognizer.Bioinformatics2014
236713353DEM Loupe: Analysis of macromolecular dynamics using structures from electron microscopy.Nucleic Acids Res2013
24289158wKinMut: an integrated tool for the analysis and interpretation of mutations in human protein kinases.BMC Bioinformatics2013
24121791Recurrent inactivation of STAG2 in bladder cancer is not associated with aneuploidy.Nat Genet2013
23900255Computational approaches to identify functional genetic variants in cancer genomes.Nat Methods2013
22348024Quantification of miRNA-mRNA interactions.PLoS One2012
23300415Chapter 14: Cancer genome analysis.PLoS Comput Biol2012
22759651Prioritization of pathogenic mutations in the protein kinase superfamily.BMC Genomics2012
22438567How to link ontologies and protein-protein interactions to literature: text-mining approaches and the BioCreative experience.Database (Oxford)2012
22151929The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text.BMC Bioinformatics2011
27467152Text Mining for Drugs and Chemical Compounds: Methods, Tools and Applications.Mol Inform2011
22158541Exome sequencing identifies recurrent mutations of the splicing factor SF3B1 gene in chronic lymphocytic leukemia.Nat Genet2011
20513648MARQ: an online tool to mine GEO for experiments with similar or opposite gene expression signatures.Nucleic Acids Res2010
19458159SENT: semantic features in text.Nucleic Acids Res2009
19465387GeneCodis: interpreting gene lists through enrichment analysis and integration of diverse biological information.Nucleic Acids Res2009
18515346bioNMF: a web-based tool for nonnegative matrix factorization in biology.Nucleic Acids Res2008
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Collaborators

Alfonso Valencia
Josep Carreras Leukaemia Research Institute (IJC)
Co-authored papers 25
Martin Krallinger
Spanish National Cancer Research Centre
Co-authored papers 7
Florian Leitner
Co-authored papers 6
Alberto Pascual-Montano
National Center for Biotechnology-CSIC
Co-authored papers 6
Chris Sander
Broad Institute of MIT and Harvard
Co-authored papers 4
David Salgado
Co-authored papers 3
Jose Maria Carazo
National Centre for Biotechnology (CNB CSIC), Campus Universidad Autonoma de Madrid
Co-authored papers 3
Astrid Laegreid
Norwegian University of Science and Technology
Co-authored papers 3
??smund Flobak
Norwegian University of Science and Technology
Co-authored papers 3
Marta Gut
Universitat de Barcelona (UB)
Co-authored papers 3
Luana Licata
University of Tor Vergata
Co-authored papers 3
Simon Heath
Barcelona Institute of Science and Technology (BIST)
Co-authored papers 2
Vasundra Tour??
Norwegian University of Science and Technology (NTNU)
Co-authored papers 2
Robert Leaman
National Institutes of Health
Co-authored papers 2
Cristoffer Sevilla
Co-authored papers 2
Augustin Luna
Harvard Medical School
Co-authored papers 2
Ozgun Babur
Houston Methodist Research Institute
Co-authored papers 2
Marc Gillespie
Ontario Institute for Cancer Research
Co-authored papers 2
Aurelien Dugourd
Institute of Experimental Medicine and Systems Biology, RWTH Aachen University
Co-authored papers 2
Reinhard Schneider
Co-authored papers 2
Ville Mustonen
University of Helsinki
Co-authored papers 2
Roger Stephan
Ontario Institute for Cancer Research
Co-authored papers 2
Carole Goble
University of Manchester
Co-authored papers 2
Francisco X Real
Spanish National Cancer Research Centre-CNIO
Co-authored papers 2
Rune Linding
Humboldt-Universitat zu Berlin
Co-authored papers 2
Abel Gonzalez-Perez
Universitat Pompeu Fabra
Co-authored papers 2
Tatsuhiro Shibata
Kurume University School of Medicine
Co-authored papers 2
Angela Del Pozo
Instituto de Genetica Medica y Molecular (INGEMM), Hospital Universitario La Paz
Co-authored papers 2
Karen Rothfels
Co-authored papers 2
S??ren Brunak
Novo Nordisk Foundation Center for Protein Research, University of Copenhagen
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