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Author Details

Jeffrey A Ranish
Institute for Systems Biology
1991
82
46
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37542049The AT-hook is an evolutionarily conserved auto-regulatory domain of SWI/SNF required for cell lineage priming.Nat Commun2023
36041630Systematic mutagenesis of TFIIH subunit p52/Tfb2 identifies residues required for XPB/Ssl2 subunit function and genetic interactions with TFB6.J Biol Chem2022
34634302TAF8 regions important for TFIID lobe B assembly or for TAF2 interactions are required for embryonic stem cell survival.J Biol Chem2021
33627513Chromatin-Associated Protein Complexes Link DNA Base J and Transcription Termination in <i>Leishmania</i>.mSphere2021
33714970Proteomic/transcriptomic analysis of erythropoiesis.Curr Opin Hematol2021
32253345Assembly of SNAPc, Bdp1, and TBP on the U6 snRNA Gene Promoter in Drosophila melanogaster.Mol Cell Biol2020
33377109Absolute quantification of transcription factors in human erythropoiesis using selected reaction monitoring mass spectrometry.STAR Protoc2020
33053319A Structural Model of the Endogenous Human BAF Complex Informs Disease Mechanisms.Cell2020
32312822Loss of the neural-specific BAF subunit ACTL6B relieves repression of early response genes and causes recessive autism.Proc Natl Acad Sci U S A2020
31168746Identification of Cross-linked Peptides Using Isotopomeric Cross-linkers.J Am Soc Mass Spectrom2019
31886770Architecture of the chromatin remodeler RSC and insights into its nucleosome engagement.Elife2019
31269447Histone Octamer Structure Is Altered Early in ISW2 ATP-Dependent Nucleosome Remodeling.Cell Rep2019
30880026Single-Cell Proteomics Reveal that Quantitative Changes in Co-expressed Lineage-Specific Transcription Factors Determine Cell Fate.Cell Stem Cell2019
29507182Transcription Activation Domains of the Yeast Factors Met4 and Ino2: Tandem Activation Domains with Properties Similar to the Yeast Gcn4 Activator.Mol Cell Biol2018
30405110Molecular structure of promoter-bound yeast TFIID.Nat Commun2018
30343899Modular Organization and Assembly of SWI/SNF Family Chromatin Remodeling Complexes.Cell2018
30442764Structure of human TFIID and mechanism of TBP loading onto promoter DNA.Science2018
29562181Gcn4-Mediator Specificity Is Mediated by a Large and Dynamic Fuzzy Protein-Protein Complex.Cell Rep2018
28945250SMARCB1 is required for widespread BAF complex-mediated activation of enhancers and bivalent promoters.Nat Genet2017
28249160Loss of Snf5 Induces Formation of an Aberrant SWI/SNF Complex.Cell Rep2017
28320772Mechanism for microbial population collapse in a fluctuating resource environment.Mol Syst Biol2017
27381459Function of Conserved Topological Regions within the Saccharomyces cerevisiae Basal Transcription Factor TFIIH.Mol Cell Biol2016
27898395Corrigendum: Quantitative proteomic analysis of purified yeast kinetochores identifies a PP1 regulatory subunit.Genes Dev2016
27708162The Architecture of Trypanosoma brucei editosomes.Proc Natl Acad Sci U S A2016
25755249An LXR-NCOA5 gene regulatory complex directs inflammatory crosstalk-dependent repression of macrophage cholesterol efflux.EMBO J2015
26340423Architecture of the Human and Yeast General Transcription and DNA Repair Factor TFIIH.Mol Cell2015
25792597Regulation of Mec1 kinase activity by the SWI/SNF chromatin remodeling complex.Genes Dev2015
25132180Architecture of the Saccharomyces cerevisiae RNA polymerase I Core Factor complex.Nat Struct Mol Biol2014
25512493Regulation of the Rhp26ERCC6/CSB chromatin remodeler by a novel conserved leucine latch motif.Proc Natl Acad Sci U S A2014
25216679Architecture of the Saccharomyces cerevisiae SAGA transcription coactivator complex.EMBO J2014
25073102Control of RecBCD enzyme activity by DNA binding- and Chi hotspot-dependent conformational changes.J Mol Biol2014
23540550Glycocapture-assisted global quantitative proteomics (gagQP) reveals multiorgan responses in serum toxicoproteome.J Proteome Res2013
23644491Proteomic and bioinformatic analysis of mammalian SWI/SNF complexes identifies extensive roles in human malignancy.Nat Genet2013
23388641Systematic measurement of transcription factor-DNA interactions by targeted mass spectrometry identifies candidate gene regulatory proteins.Proc Natl Acad Sci U S A2013
23408894The Mub1/Ubr2 ubiquitin ligase complex regulates the conserved Dsn1 kinetochore protein.PLoS Genet2013
22067100An integrated chemical cross-linking and mass spectrometry approach to study protein complex architecture and function.Mol Cell Proteomics2012
22711989Phosphorylation-dependent regulation of cyclin D1 and cyclin A gene transcription by TFIID subunits TAF1 and TAF7.Mol Cell Biol2012
22521787Phosphoregulation of Spc105 by Mps1 and PP1 regulates Bub1 localization to kinetochores.Curr Biol2012
21169564Index-ion triggered MS2 ion quantification: a novel proteomics approach for reproducible detection and quantification of targeted proteins in complex mixtures.Mol Cell Proteomics2011
21330404Multiple sequence-specific DNA-binding proteins mediate estrogen receptor signaling through a tethering pathway.Mol Endocrinol2011
20404088KLF3 regulates muscle-specific gene expression and synergizes with serum response factor on KLF binding sites.Mol Cell Biol2010
21107429Tension directly stabilizes reconstituted kinetochore-microtubule attachments.Nature2010
19279220An embryonic stem cell chromatin remodeling complex, esBAF, is essential for embryonic stem cell self-renewal and pluripotency.Proc Natl Acad Sci U S A2009
19948764Quantitative proteomic analysis of purified yeast kinetochores identifies a PP1 regulatory subunit.Genes Dev2009
20026657p38-{gamma}-dependent gene silencing restricts entry into the myogenic differentiation program.J Cell Biol2009
19581288Phosphorylation of the transcription elongation factor Spt5 by yeast Bur1 kinase stimulates recruitment of the PAF complex.Mol Cell Biol2009
19822740Dual role for the methyltransferase G9a in the maintenance of beta-globin gene transcription in adult erythroid cells.Proc Natl Acad Sci U S A2009
19822728Analysis of Ipl1-mediated phosphorylation of the Ndc80 kinetochore protein in Saccharomyces cerevisiae.Genetics2009
19816138Quantitative proteomics identifies oxidant-induced, AtMPK6-dependent changes in Arabidopsis thaliana protein profiles.Plant Signal Behav2009
19179536Calcineurin/NFAT signaling is required for neuregulin-regulated Schwann cell differentiation.Science2009
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Collaborators

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Institute for Systems Biology
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Institute of Molecular Systems Biology, ETH Zurich
Co-authored papers 22
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Fred Hutchinson Cancer Center
Co-authored papers 20
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University of Washington
Co-authored papers 7
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Co-authored papers 7
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Co-authored papers 4
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Stanford University
Co-authored papers 3
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Co-authored papers 3
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Co-authored papers 3
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Co-authored papers 2
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Co-authored papers 2
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Seattle Children's Research Institute
Co-authored papers 2
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Human Genetics and Genome Research Institute, National Research Centre
Co-authored papers 1
Vishnu Raman
University of Colorado
Co-authored papers 1
Timothy J Griffin
University of Minnesota
Co-authored papers 1
David J Dilworth
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Co-authored papers 1
David A Stahl
University of Washington
Co-authored papers 1
Robert L Moritz
Institute for Systems Biology
Co-authored papers 1
Miklos Guttman
University of Washington
Co-authored papers 1
Kristina L Hillesland
University of Washington Bothell
Co-authored papers 1
Jia Fei
Co-authored papers 1
Judy D Wall
University of Missouri
Co-authored papers 1
Bernd Wollscheid
ETH Zurich
Co-authored papers 1
Jenny Chong
Co-authored papers 1
Vesteinn Thorsson
Institute for Systems Biology
Co-authored papers 1
Release 1.2