Author details

Full Name

Alexandra J Lee

Affiliation

University of Pennsylvania

ORCID

Career Start Year

2015

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36034485	Application of Traditional Vaccine Development Strategies to SARS-CoV-2.	ArXiv	2023
36034485	Application of Traditional Vaccine Development Strategies to SARS-CoV-2.	ArXiv	2023
36541762	Compendium-Wide Analysis of Pseudomonas aeruginosa Core and Accessory Genes Reveals Transcriptional Patterns across Strains PAO1 and PA14.	mSystems	2023
36541761	Computationally Efficient Assembly of Pseudomonas aeruginosa Gene Expression Compendia.	mSystems	2023
36861991	Application of Traditional Vaccine Development Strategies to SARS-CoV-2.	mSystems	2023
36861992	The Coming of Age of Nucleic Acid Vaccines during COVID-19.	mSystems	2023
36541762	Compendium-Wide Analysis of Pseudomonas aeruginosa Core and Accessory Genes Reveals Transcriptional Patterns across Strains PAO1 and PA14.	mSystems	2023
36541761	Computationally Efficient Assembly of Pseudomonas aeruginosa Gene Expression Compendia.	mSystems	2023
36861991	Application of Traditional Vaccine Development Strategies to SARS-CoV-2.	mSystems	2023
36861992	The Coming of Age of Nucleic Acid Vaccines during COVID-19.	mSystems	2023
35143491	Ten simple rules for large-scale data processing.	PLoS Comput Biol	2022
35710652	CF-Seq, an accessible web application for rapid re-analysis of cystic fibrosis pathogen RNA sequencing studies.	Sci Data	2022
36016717	Using genome-wide expression compendia to study microorganisms.	Comput Struct Biotechnol J	2022
36216026	SOPHIE: Generative Neural Networks Separate Common and Specific Transcriptional Responses.	Genomics Proteomics Bioinformatics	2022
35143491	Ten simple rules for large-scale data processing.	PLoS Comput Biol	2022
35076276	Correction for Rando et al., "Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through Analysis of Viral Genomics and Structure".	mSystems	2022
35710652	CF-Seq, an accessible web application for rapid re-analysis of cystic fibrosis pathogen RNA sequencing studies.	Sci Data	2022
36016717	Using genome-wide expression compendia to study microorganisms.	Comput Struct Biotechnol J	2022
36216026	SOPHIE: Generative Neural Networks Separate Common and Specific Transcriptional Responses.	Genomics Proteomics Bioinformatics	2022
35076276	Correction for Rando et al., "Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through Analysis of Viral Genomics and Structure".	mSystems	2022
33140829	Correcting for experiment-specific variability in expression compendia can remove underlying signals.	Gigascience	2020
31980538	<i>Pseudomonas aeruginosa lasR</i> mutant fitness in microoxia is supported by an Anr-regulated oxygen-binding hemerythrin.	Proc Natl Acad Sci U S A	2020
33140829	Correcting for experiment-specific variability in expression compendia can remove underlying signals.	Gigascience	2020
31980538	<i>Pseudomonas aeruginosa lasR</i> mutant fitness in microoxia is supported by an Anr-regulated oxygen-binding hemerythrin.	Proc Natl Acad Sci U S A	2020
31744546	The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens.	Genome Biol	2019
31744546	The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens.	Genome Biol	2019
29665244	DAFi: A directed recursive data filtering and clustering approach for improving and interpreting data clustering identification of cell populations from polychromatic flow cytometry data.	Cytometry A	2018
29665244	DAFi: A directed recursive data filtering and clustering approach for improving and interpreting data clustering identification of cell populations from polychromatic flow cytometry data.	Cytometry A	2018
27679478	Influenza Research Database: An integrated bioinformatics resource for influenza virus research.	Nucleic Acids Res	2017
28798746	Automated Analysis of Flow Cytometry Data to Reduce Inter-Lab Variation in the Detection of Major Histocompatibility Complex Multimer-Binding T Cells.	Front Immunol	2017
28562637	Identification of diagnostic peptide regions that distinguish Zika virus from related mosquito-borne Flaviviruses.	PLoS One	2017
29322913	Cell type discovery and representation in the era of high-content single cell phenotyping.	BMC Bioinformatics	2017
27679478	Influenza Research Database: An integrated bioinformatics resource for influenza virus research.	Nucleic Acids Res	2017
29322913	Cell type discovery and representation in the era of high-content single cell phenotyping.	BMC Bioinformatics	2017
28562637	Identification of diagnostic peptide regions that distinguish Zika virus from related mosquito-borne Flaviviruses.	PLoS One	2017
28798746	Automated Analysis of Flow Cytometry Data to Reduce Inter-Lab Variation in the Detection of Major Histocompatibility Complex Multimer-Binding T Cells.	Front Immunol	2017
28512577	Genetic changes found in a distinct clade of Enterovirus D68 associated with paralysis during the 2014 outbreak.	Virus Evol	2016
28512577	Genetic changes found in a distinct clade of Enterovirus D68 associated with paralysis during the 2014 outbreak.	Virus Evol	2016
25741011	Diversifying Selection Analysis Predicts Antigenic Evolution of 2009 Pandemic H1N1 Influenza A Virus in Humans.	J Virol	2015
25741011	Diversifying Selection Analysis Predicts Antigenic Evolution of 2009 Pandemic H1N1 Influenza A Virus in Humans.	J Virol	2015

1 - 40 of 40

Katie R Bradwell

Institute for Genome Sciences, University of Maryland School of Medicine

Career Start Year 2013

Number of shared co-authors 1

Cameron Ross MacPherson

Rigshospitalet, Copenhagen University Hospital

Career Start Year 2008

Number of shared co-authors 2

Bin Hu

Los Alamos National Laboratory

Career Start Year 2008

Number of shared co-authors 0

Joshua W K Ho

The University of Hong Kong

Career Start Year 2006

Number of shared co-authors 0

Simon Anders

Heidelberg University

Career Start Year 2006

Number of shared co-authors 2

Gang Fang

Icahn School of Medicine at Mount Sinai

Career Start Year 2005

Number of shared co-authors 5

Jean Chang

Center for Innate Immunity and Immune Disease, University of Washington

Career Start Year 2005

Number of shared co-authors 5

Rick Stevens

Argonne National Laboratory

Career Start Year 2004

Number of shared co-authors 5

Christopher E Mason

Feil Family Brain and Mind Research Institute.

Career Start Year 2004

Number of shared co-authors 5

Joshua Orvis

Institute for Genome Sciences, University of Maryland School of Medicine

Career Start Year 2004

Number of shared co-authors 5

Robert Sebra

Icahn School of Medicine at Mount Sinai

Career Start Year 2004

Number of shared co-authors 1

Elena Zaslavsky

Icahn School of Medicine at Mount Sinai

Career Start Year 2004

Number of shared co-authors 1

Lachlan J M Coin

The Peter Doherty Institute for Infection and Immunity, The University of Melbourne

Career Start Year 2003

Number of shared co-authors 2

Maulik Shukla

University of Chicago

Career Start Year 2003

Number of shared co-authors 4

Vladimir Jojic

Calico Life Sciences LLC

Career Start Year 2003

Number of shared co-authors 0

Purvesh Khatri

University of California San Francisco

Career Start Year 2002

Number of shared co-authors 3

Harm van Bakel

Icahn School of Medicine at Mount Sinai

Career Start Year 2002

Number of shared co-authors 3

Hugh D Mitchell

Pacific Northwest National Laboratory (PNNL)

Career Start Year 2002

Number of shared co-authors 5

Scott J Emrich

The Pennsylvania State University College of Medicine

Career Start Year 2002

Number of shared co-authors 2

Jian Wang

Institute of Medical Research, Northwestern Polytechnical University

Career Start Year 2001

Number of shared co-authors 0

Erliang Zeng

College of Dentistry, University of Iowa

Career Start Year 2001

Number of shared co-authors 0

Eran Segal

Weizmann Institute of Science

Career Start Year 2001

Number of shared co-authors 3

Karsten Hokamp

Smurfit Institute of Genetics, Trinity College of Dublin

Career Start Year 1999

Number of shared co-authors 0

David R Powell

Biomedicine Discovery Institute, Monash University

Career Start Year 1998

Number of shared co-authors 0

Mark D Robinson

University of Zurich

Career Start Year 1997

Number of shared co-authors 4

Robert A Holt

BC Cancer Research Institute

Career Start Year 1996

Number of shared co-authors 2

Joseph L DeRisi

University of California San Francisco

Career Start Year 1994

Number of shared co-authors 0

Jason E McDermott

Pacific Northwest National Laboratory

Career Start Year 1993

Number of shared co-authors 5

Roger E Bumgarner

University of Washington

Career Start Year 1992

Number of shared co-authors 3

Roderick V Jensen

Virginia Tech

Career Start Year 1985

Number of shared co-authors 0

row(s) 1 - 30 of 30

Casey S Greene

Dartmouth College Geisel School of Medicine, Princeton University, University of Colorado Anschutz Medical Campus, University of Pennsylvania Perelman School of Medicine

Co-authored papers 12

Casey S Greene

Co-authored papers 8

Deborah A Hogan

Geisel School of Medicine at Dartmouth

Co-authored papers 8

Richard H Scheuermann

J. Craig Venter Institute

Co-authored papers 7

Georgia Doing

Geisel School of Medicine at Dartmouth

Co-authored papers 6