Author details

Full Name

Olga G Troyanskaya

Affiliation

Lewis-Sigler Institute for Integrative Genomics, Princeton University

ORCID

Career Start Year

2001

Papers

165

H Index

Expertise

CM4AI Collaborator

Emma Lundberg (CM4AI)

PMID	Paper Title	Journal Title	Published Year
38084892	Peak-agnostic high-resolution cis-regulatory circuitry mapping using single cell multiome data.	Nucleic Acids Res	2024
38084892	Peak-agnostic high-resolution cis-regulatory circuitry mapping using single cell multiome data.	Nucleic Acids Res	2024
36936082	Blood RNA alternative splicing events as diagnostic biomarkers for infectious disease.	Cell Rep Methods	2023
37808658	Integrated single-cell multiome analysis reveals muscle fiber-type gene regulatory circuitry modulated by endurance exercise.	bioRxiv	2023
37808087	Interpretable neural architecture search and transfer learning for understanding CRISPR/Cas9 off-target enzymatic reactions.	ArXiv	2023
37974651	Mapping disease regulatory circuits at cell-type resolution from single-cell multiomics data.	Nat Comput Sci	2023
37703883	Atlas of primary cell-type-specific sequence models of gene expression and variant effects.	Cell Rep Methods	2023
36812347	Oral mucosal breaks trigger anti-citrullinated bacterial and human protein antibody responses in rheumatoid arthritis.	Sci Transl Med	2023
36936082	Blood RNA alternative splicing events as diagnostic biomarkers for infectious disease.	Cell Rep Methods	2023
36919946	A methylation clock model of mild SARS-CoV-2 infection provides insight into immune dysregulation.	Mol Syst Biol	2023
37808658	Integrated single-cell multiome analysis reveals muscle fiber-type gene regulatory circuitry modulated by endurance exercise.	bioRxiv	2023
37808087	Interpretable neural architecture search and transfer learning for understanding CRISPR/Cas9 off-target enzymatic reactions.	ArXiv	2023
37703883	Atlas of primary cell-type-specific sequence models of gene expression and variant effects.	Cell Rep Methods	2023
37974651	Mapping disease regulatory circuits at cell-type resolution from single-cell multiomics data.	Nat Comput Sci	2023
36919946	A methylation clock model of mild SARS-CoV-2 infection provides insight into immune dysregulation.	Mol Syst Biol	2023
36812347	Oral mucosal breaks trigger anti-citrullinated bacterial and human protein antibody responses in rheumatoid arthritis.	Sci Transl Med	2023
35165450	Author Correction: An analytical framework for interpretable and generalizable single-cell data analysis.	Nat Methods	2022
35817977	A sequence-based global map of regulatory activity for deciphering human genetics.	Nat Genet	2022
35944149	SARS-CoV-2 Outbreak Dynamics in an Isolated US Military Recruit Training Center With Rigorous Prevention Measures.	Epidemiology	2022
35871289	Double-stranded RNA drives SARS-CoV-2 nucleocapsid protein to undergo phase separation at specific temperatures.	Nucleic Acids Res	2022
35675394	A reference tissue atlas for the human kidney.	Sci Adv	2022
35479098	Asymptomatic SARS-CoV-2 Infection Is Associated With Higher Levels of Serum IL-17C, Matrix Metalloproteinase 10 andÂ Fibroblast Growth Factors Than Mild Symptomatic COVID-19.	Front Immunol	2022
35477557	Molecular Characterization of Membranous Nephropathy.	J Am Soc Nephrol	2022
36323307	Pre-infection antiviral innate immunity contributes to sex differences in SARS-CoV-2 infection.	Cell Syst	2022
35537413	An activation to memory differentiation trajectory of tumor-infiltrating lymphocytes informs metastatic melanoma outcomes.	Cancer Cell	2022
36549275	Multi-objective optimization identifies a specific and interpretable COVID-19 host response signature.	Cell Syst	2022
35165450	Author Correction: An analytical framework for interpretable and generalizable single-cell data analysis.	Nat Methods	2022
35263594	Single nucleus transcriptome and chromatin accessibility of postmortem human pituitaries reveal diverse stem cell regulatory mechanisms.	Cell Rep	2022
35479098	Asymptomatic SARS-CoV-2 Infection Is Associated With Higher Levels of Serum IL-17C, Matrix Metalloproteinase 10 andÂ Fibroblast Growth Factors Than Mild Symptomatic COVID-19.	Front Immunol	2022
35477557	Molecular Characterization of Membranous Nephropathy.	J Am Soc Nephrol	2022
35675394	A reference tissue atlas for the human kidney.	Sci Adv	2022
35537413	An activation to memory differentiation trajectory of tumor-infiltrating lymphocytes informs metastatic melanoma outcomes.	Cancer Cell	2022
35817977	A sequence-based global map of regulatory activity for deciphering human genetics.	Nat Genet	2022
36549275	Multi-objective optimization identifies a specific and interpretable COVID-19 host response signature.	Cell Syst	2022
35871289	Double-stranded RNA drives SARS-CoV-2 nucleocapsid protein to undergo phase separation at specific temperatures.	Nucleic Acids Res	2022
36323307	Pre-infection antiviral innate immunity contributes to sex differences in SARS-CoV-2 infection.	Cell Syst	2022
35944149	SARS-CoV-2 Outbreak Dynamics in an Isolated US Military Recruit Training Center With Rigorous Prevention Measures.	Epidemiology	2022
35263594	Single nucleus transcriptome and chromatin accessibility of postmortem human pituitaries reveal diverse stem cell regulatory mechanisms.	Cell Rep	2022
32792660	Presenilin 1 phosphorylation regulates amyloid-Î² degradation by microglia.	Mol Psychiatry	2021
33910979	SynNotch-CAR T cells overcome challenges of specificity, heterogeneity, and persistence in treating glioblastoma.	Sci Transl Med	2021
33637194	Rationale and design of the Kidney Precision Medicine Project.	Kidney Int	2021
33964243	Viable virus shedding during SARS-CoV-2 reinfection.	Lancet Respir Med	2021
33689683	Tissue-specific enhancer functional networks for associating distal regulatory regions to disease.	Cell Syst	2021
33532780	mRNA-1273 efficacy in a severe COVID-19 model: attenuated activation of pulmonary immune cells after challenge.	bioRxiv	2021
34159327	Double-stranded RNA drives SARS-CoV-2 nucleocapsid protein to undergo phase separation at specific temperatures.	bioRxiv	2021
33888512	Modeling transcriptional regulation of model species with deep learning.	Genome Res	2021
33462483	Genome-wide landscape of RNA-binding protein target site dysregulation reveals a major impact on psychiatric disorder risk.	Nat Genet	2021
33606833	Correction: Lack of a site-specific phosphorylation of Presenilin 1 disrupts microglial gene networks and progenitors during development.	PLoS One	2021
34252931	CROTON: an automated and variant-aware deep learning framework for predicting CRISPR/Cas9 editing outcomes.	Bioinformatics	2021
33976139	Single nucleus multi-omics regulatory landscape of the murine pituitary.	Nat Commun	2021

1 - 50 of 330

Ludwig Geistlinger

Center for Computational Biomedicine, Harvard Medical School

Career Start Year 2008

Number of shared co-authors 4

Joshua W K Ho

The University of Hong Kong

Career Start Year 2006

Number of shared co-authors 2

Diogo F T Veiga

University of Campinas (UNICAMP)

Career Start Year 2006

Number of shared co-authors 0

Theo A Knijnenburg

Allen Institute for Cell Science

Career Start Year 2006

Number of shared co-authors 6

Dongxiao Zhu

Wayne State University

Career Start Year 2005

Number of shared co-authors 0

Stephen A Ramsey

Oregon State University

Career Start Year 2004

Number of shared co-authors 0

Xianghong Jasmine Zhou

David Geffen School of Medicine, University of California at Los Angeles

Career Start Year 2004

Number of shared co-authors 3

Zhandong Liu

Jan and Dan Duncan Neurological Research Institute at Texas Children's Hospital

Career Start Year 2003

Number of shared co-authors 7

Chunlei Wu

The Scripps Research Institute

Career Start Year 2002

Number of shared co-authors 1

Haiyuan Yu

Weill Institute for Cell and Molecular Biology, Cornell University

Career Start Year 2001

Number of shared co-authors 12

Daphne Koller

Stanford University

Career Start Year 2001

Number of shared co-authors 12

Johan Rung

Uppsala University

Career Start Year 2001

Number of shared co-authors 6

Joshua M Stuart

University of California at Santa Cruz

Career Start Year 2000

Number of shared co-authors 15

Roded Sharan

Tel Aviv University

Career Start Year 2000

Number of shared co-authors 9

Kai Tan

University of Pennsylvania

Career Start Year 1999

Number of shared co-authors 1

Igor Jurisica

Schroeder Arthritis Institute

Career Start Year 1998

Number of shared co-authors 4

Ralf Herwig

Max Planck Institute for Molecular Genetics

Career Start Year 1998

Number of shared co-authors 1

Trey Ideker (CM4AI)

University of California San Diego

Career Start Year 1996

Number of shared co-authors 44

Panayiotis V Benos

University of Florida

Career Start Year 1996

Number of shared co-authors 6

Wolfgang Huber

Technische Universitat Munchen

Career Start Year 1995

Number of shared co-authors 7

Ron Shamir

Tel Aviv University

Career Start Year 1995

Number of shared co-authors 4

Simon Kasif

Boston University

Career Start Year 1993

Number of shared co-authors 6

Andrea Califano

Columbia University

Career Start Year 1993

Number of shared co-authors 18

Jill P Mesirov

University of California San Diego

Career Start Year 1992

Number of shared co-authors 12

Mark Gerstein

Yale University

Career Start Year 1991

Number of shared co-authors 27

Andreas Beyer

University of Cologne

Career Start Year 1991

Number of shared co-authors 4

Wing Hung Wong

Stanford University

Career Start Year 1991

Number of shared co-authors 9

Robert Gentleman

Center for Computational Biomedicine, Harvard Medical School

Career Start Year 1991

Number of shared co-authors 3

John Quackenbush

Harvard T. H. Chan School of Public Health

Career Start Year 1989

Number of shared co-authors 12

Michael F Ochs

The College of New Jersey

Career Start Year 1988

Number of shared co-authors 4

row(s) 1 - 30 of 30

Aaron K Wong

Flatiron Institute, Simons Foundation

Co-authored papers 28

Chad L Myers

University of Minnesota - Twin Cities

Co-authored papers 22

Curtis Huttenhower

Broad Institute of MIT and Harvard

Co-authored papers 21

Stuart C Sealfon

Icahn School of Medicine at Mount Sinai

Co-authored papers 20

Matthew A Hibbs

Co-authored papers 17

Chandra L Theesfeld

Lewis-Sigler Institute for Integrative Genomics, Princeton University

Co-authored papers 15

David Botstein

Calico Life Sciences LLC

Co-authored papers 14

Elena Zaslavsky

Icahn School of Medicine at Mount Sinai

Co-authored papers 13

Yuanfang Guan

University of Michigan ann arbor

Co-authored papers 12

Arjun Krishnan

Michigan State University

Co-authored papers 11

Vessela N Kristensen

Faculty of Clinical Medicine, University of Oslo

Co-authored papers 10

Casey S Greene

Dartmouth College Geisel School of Medicine, Princeton University, University of Colorado Anschutz Medical Campus, University of Pennsylvania Perelman School of Medicine

Co-authored papers 10

Matthias Kretzler

University of Michigan ann arbor

Co-authored papers 10

Christopher Y Park

NYU Robert I. Grossman School of Medicine

Co-authored papers 9

Maria Chikina

University of Pittsburgh

Co-authored papers 9

Casey S Greene

Co-authored papers 9