Author details

Full Name

Noushin Ghaffari

Affiliation

Prairie View A&M University

ORCID

Career Start Year

2008

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36829529	Inter-Individual Variation in DNA Methylation Patterns across Two Tissues and Leukocytes in Mature Brahman Cattle.	Biology (Basel)	2023
36829529	Inter-Individual Variation in DNA Methylation Patterns across Two Tissues and Leukocytes in Mature Brahman Cattle.	Biology (Basel)	2023
35991551	DNA methylation patterns and gene expression from amygdala tissue of mature Brahman cows exposed to prenatal stress.	Front Genet	2022
35991551	DNA methylation patterns and gene expression from amygdala tissue of mature Brahman cows exposed to prenatal stress.	Front Genet	2022
33644273	Raw pacific biosciences and illumina sequencing reads and assembled genome data for the cattle ticks <i>Rhipicephalus microplus</i> and <i>Rhipicephalus annulatus</i>.	Data Brief	2021
33644273	Raw pacific biosciences and illumina sequencing reads and assembled genome data for the cattle ticks <i>Rhipicephalus microplus</i> and <i>Rhipicephalus annulatus</i>.	Data Brief	2021
32541955	A robust benchmark for detection of germline large deletions and insertions.	Nat Biotechnol	2020
32243084	Identification and quantification of coding and long non-coding RNAs in stallion spermatozoa separated by density.	Andrology	2020
32541955	A robust benchmark for detection of germline large deletions and insertions.	Nat Biotechnol	2020
32699374	Author Correction: A robust benchmark for detection of germline large deletions and insertions.	Nat Biotechnol	2020
32699374	Author Correction: A robust benchmark for detection of germline large deletions and insertions.	Nat Biotechnol	2020
32243084	Identification and quantification of coding and long non-coding RNAs in stallion spermatozoa separated by density.	Andrology	2020
30804225	Tissue-specific BMAL1 cistromes reveal that rhythmic transcription is associated with rhythmic enhancer-enhancer interactions.	Genes Dev	2019
31656838	The Pacific Biosciences <i>de novo</i> assembled genome dataset from a parthenogenetic New Zealand wild population of the longhorned tick, <i>Haemaphysalis longicornis</i> Neumann, 1901.	Data Brief	2019
30804225	Tissue-specific BMAL1 cistromes reveal that rhythmic transcription is associated with rhythmic enhancer-enhancer interactions.	Genes Dev	2019
31656838	The Pacific Biosciences <i>de novo</i> assembled genome dataset from a parthenogenetic New Zealand wild population of the longhorned tick, <i>Haemaphysalis longicornis</i> Neumann, 1901.	Data Brief	2019
29610098	Examining De Novo Transcriptome Assemblies via a Quality Assessment Pipeline.	IEEE/ACM Trans Comput Biol Bioinform	2018
29610098	Examining De Novo Transcriptome Assemblies via a Quality Assessment Pipeline.	IEEE/ACM Trans Comput Biol Bioinform	2018
28528020	Optimal hybrid sequencing and assembly: Feasibility conditions for accurate genome reconstruction and cost minimization strategy.	Comput Biol Chem	2017
28528020	Optimal hybrid sequencing and assembly: Feasibility conditions for accurate genome reconstruction and cost minimization strategy.	Comput Biol Chem	2017
28874136	HiMMe: using genetic patterns as a proxy for genome assembly reliability assessment.	BMC Genomics	2017
28874136	HiMMe: using genetic patterns as a proxy for genome assembly reliability assessment.	BMC Genomics	2017
26956617	A Colletotrichum graminicola mutant deficient in the establishment of biotrophy reveals early transcriptional events in the maize anthracnose disease interaction.	BMC Genomics	2016
26956617	A Colletotrichum graminicola mutant deficient in the establishment of biotrophy reveals early transcriptional events in the maize anthracnose disease interaction.	BMC Genomics	2016
25420880	Novel transcriptome assembly and improved annotation of the whiteleg shrimp (Litopenaeus vannamei), a dominant crustacean in global seafood mariculture.	Sci Rep	2014
25420880	Novel transcriptome assembly and improved annotation of the whiteleg shrimp (Litopenaeus vannamei), a dominant crustacean in global seafood mariculture.	Sci Rep	2014
24118904	Modeling the next generation sequencing sample processing pipeline for the purposes of classification.	BMC Bioinformatics	2013
24118904	Modeling the next generation sequencing sample processing pipeline for the purposes of classification.	BMC Bioinformatics	2013
22340285	Whole-genome sequencing and genetic variant analysis of a Quarter Horse mare.	BMC Genomics	2012
22340285	Whole-genome sequencing and genetic variant analysis of a Quarter Horse mare.	BMC Genomics	2012
22165852	Evaluation of the coverage and depth of transcriptome by RNA-Seq in chickens.	BMC Bioinformatics	2011
22165980	A CoD-based stationary control policy for intervening in large gene regulatory networks.	BMC Bioinformatics	2011
22165852	Evaluation of the coverage and depth of transcriptome by RNA-Seq in chickens.	BMC Bioinformatics	2011
22165980	A CoD-based stationary control policy for intervening in large gene regulatory networks.	BMC Bioinformatics	2011
20421196	A CoD-based reduction algorithm for designing stationary control policies on Boolean networks.	Bioinformatics	2010
20956246	State reduction for network intervention in probabilistic Boolean networks.	Bioinformatics	2010
20421196	A CoD-based reduction algorithm for designing stationary control policies on Boolean networks.	Bioinformatics	2010
20956246	State reduction for network intervention in probabilistic Boolean networks.	Bioinformatics	2010
19527511	Intervention in gene regulatory networks via greedy control policies based on long-run behavior.	BMC Syst Biol	2009
19527511	Intervention in gene regulatory networks via greedy control policies based on long-run behavior.	BMC Syst Biol	2009
18831798	Biomarker discovery across annotated and unannotated microarray datasets using semi-supervised learning.	BMC Genomics	2008
18831798	Biomarker discovery across annotated and unannotated microarray datasets using semi-supervised learning.	BMC Genomics	2008

1 - 42 of 42

H??ctor Corrada Bravo

University of Maryland College Park, College Park

Career Start Year 2009

Number of shared co-authors 2

Matthew L Settles

University of California Davis Genome Center

Career Start Year 2008

Number of shared co-authors 2

Simon Anders

Heidelberg University

Career Start Year 2006

Number of shared co-authors 1

Andy D Perkins

Mississippi State University

Career Start Year 2006

Number of shared co-authors 0

Joshua W K Ho

The University of Hong Kong

Career Start Year 2006

Number of shared co-authors 0

Dongxiao Zhu

Wayne State University

Career Start Year 2005

Number of shared co-authors 0

Stephen A Ramsey

Oregon State University

Career Start Year 2004

Number of shared co-authors 0

Mikael Huss

Stockholm University

Career Start Year 2003

Number of shared co-authors 0

Zhandong Liu

Jan and Dan Duncan Neurological Research Institute at Texas Children's Hospital

Career Start Year 2003

Number of shared co-authors 1

Lachlan J M Coin

The Peter Doherty Institute for Infection and Immunity, The University of Melbourne

Career Start Year 2003

Number of shared co-authors 0

Scott J Emrich

The Pennsylvania State University College of Medicine

Career Start Year 2002

Number of shared co-authors 4

Jun Wang

Zhongnan Hospital of Wuhan University

Career Start Year 2002

Number of shared co-authors 10

Johan Rung

Uppsala University

Career Start Year 2001

Number of shared co-authors 1

Eran Segal

Weizmann Institute of Science

Career Start Year 2001

Number of shared co-authors 2

Ilya Shmulevich

Institute for Systems Biology

Career Start Year 2001

Number of shared co-authors 2

Jeong-Hyeon Choi

National Marine Biodiversity Institute of Korea

Career Start Year 2000

Number of shared co-authors 0

Ana Conesa

Institute for Integrative Systems Biology, Spanish National Research Council (CSIC)

Career Start Year 2000

Number of shared co-authors 2

David R Powell

Biomedicine Discovery Institute, Monash University

Career Start Year 1998

Number of shared co-authors 0

Mark D Robinson

University of Zurich

Career Start Year 1997

Number of shared co-authors 1

Wolfgang Huber

Technische Universitat Munchen

Career Start Year 1995

Number of shared co-authors 1

Ron Shamir

Tel Aviv University

Career Start Year 1995

Number of shared co-authors 0

Christopher T Workman

Technical University of Denmark

Career Start Year 1995

Number of shared co-authors 0

Steven J M Jones

University of British Columbia

Career Start Year 1995

Number of shared co-authors 6

Pietro Li??

University of Cambridge

Career Start Year 1994

Number of shared co-authors 1

Joel S Bader

Johns Hopkins University

Career Start Year 1993

Number of shared co-authors 0

Simon Kasif

Boston University

Career Start Year 1993

Number of shared co-authors 1

Wing Hung Wong

Stanford University

Career Start Year 1991

Number of shared co-authors 2

John Quackenbush

Harvard T. H. Chan School of Public Health

Career Start Year 1989

Number of shared co-authors 2

Roderick V Jensen

Virginia Tech

Career Start Year 1985

Number of shared co-authors 4

Seiya Imoto

Human Genome Center, The Institute of Medical Science, The University of Tokyo

Career Start Year 1978

Number of shared co-authors 1

row(s) 1 - 30 of 30

Charles D Johnson

Co-authored papers 10

Philip D Blood

Co-authored papers 3

Nancy F Hansen

National Human Genome Research Institute, National Institutes of Health

Co-authored papers 2

Kylie G Bendele

Co-authored papers 2

Fritz J Sedlazeck

Baylor College of Medicine

Co-authored papers 2

Ali Bashir

Google Accelerated Science Team, Google Inc

Co-authored papers 2

Scott V Dindot

Co-authored papers 2

John J Farrell

Boston University Chobanian & Avedisian School of Medicine

Co-authored papers 2

Iman Hajirasouliha

Institute for Computational Biomedicine

Co-authored papers 2

Michael F Criscitiello

Co-authored papers 2

Jeremiah Wala

The Broad Institute of MIT and Harvard

Co-authored papers 2

Jason E Sawyer

Co-authored papers 2

Justin M Zook

National Institute of Standards and Technology

Co-authored papers 2

Xian Fan

Rice University

Co-authored papers 2

Adam M Phillippy

National Human Genome Research Institute, National Institutes of Health

Co-authored papers 2

Alvaro Martinez Barrio

Uppsala University

Co-authored papers 2

Noah Spies

Stanford University

Co-authored papers 2

Stephen T Sherry

National Center for Biotechnology Information, National Institutes of Health

Co-authored papers 2

Ian T Fiddes

Liver Center and Diabetes Center, University of California san francisco

Co-authored papers 2

Nathan D Olson

National Institute of Standards and Technology

Co-authored papers 2

Adam C English

Baylor College of Medicine Human Genome Sequencing Center

Co-authored papers 2

Chunlin Xiao

Chongqing Aier Eye Hospital

Co-authored papers 2

Weichen Zhou

Chengdu First People's Hospital

Co-authored papers 2

Felix D Guerrero

Co-authored papers 2

Pete D Teel

Co-authored papers 2

Ken Chen

University of Texas MD Anderson Cancer Center

Co-authored papers 2

Ryan E Mills

University of Michigan Medical School ann arbor

Co-authored papers 2

Alexandre Rouette

Charles-Bruneau Cancer Center, Centre Hospitalier Universitaire (CHU) Sainte-Justine

Co-authored papers 2

Richard P Metz

Co-authored papers 2

Camir Ricketts

Institute for Computational Biomedicine, Weill Cornell Medicine of Cornell University

Co-authored papers 2

1 - 30

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