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Author Details

Nuno Bandeira
University of California
2004
95
43
Emma Lundberg (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36318223The 2022 Report on the Human Proteome from the HUPO Human Proteome Project.J Proteome Res2023
36370099The ProteomeXchange consortium at 10 years: 2023 update.Nucleic Acids Res2023
36318223The 2022 Report on the Human Proteome from the HUPO Human Proteome Project.J Proteome Res2023
37577622A Taxonomically-informed Mass Spectrometry Search Tool for Microbial Metabolomics Data.Res Sq2023
36626722Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work.J Proteome Res2023
37577622A Taxonomically-informed Mass Spectrometry Search Tool for Microbial Metabolomics Data.Res Sq2023
36626722Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work.J Proteome Res2023
36370099The ProteomeXchange consortium at 10 years: 2023 update.Nucleic Acids Res2023
34862502GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browser.Nat Methods2022
36712343NPOmix: A machine learning classifier to connect mass spectrometry fragmentation data to biosynthetic gene clusters.PNAS Nexus2022
34862502GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browser.Nat Methods2022
35290070Proteomics Standards Initiative's ProForma 2.0: Unifying the Encoding of Proteoforms and Peptidoforms.J Proteome Res2022
36712343NPOmix: A machine learning classifier to connect mass spectrometry fragmentation data to biosynthetic gene clusters.PNAS Nexus2022
35290070Proteomics Standards Initiative's ProForma 2.0: Unifying the Encoding of Proteoforms and Peptidoforms.J Proteome Res2022
33418911A Multi-Omics Characterization of the Natural Product Potential of Tropical Filamentous Marine Cyanobacteria.Mar Drugs2021
33605735Open Science Resources for the Mass Spectrometry-Based Analysis of SARS-CoV-2.J Proteome Res2021
34244695Quick-start infrastructure for untargeted metabolomics analysis in GNPS.Nat Metab2021
34183830Universal Spectrum Identifier for mass spectra.Nat Methods2021
33711481Data Management of Sensitive Human Proteomics Data: Current Practices, Recommendations, and Perspectives for the Future.Mol Cell Proteomics2021
33418911A Multi-Omics Characterization of the Natural Product Potential of Tropical Filamentous Marine Cyanobacteria.Mar Drugs2021
34670092Progress Identifying and Analyzing the Human Proteome: 2021 Metrics from the HUPO Human Proteome Project.J Proteome Res2021
34615866A proteomics sample metadata representation for multiomics integration and big data analysis.Nat Commun2021
33711481Data Management of Sensitive Human Proteomics Data: Current Practices, Recommendations, and Perspectives for the Future.Mol Cell Proteomics2021
33605735Open Science Resources for the Mass Spectrometry-Based Analysis of SARS-CoV-2.J Proteome Res2021
34615866A proteomics sample metadata representation for multiomics integration and big data analysis.Nat Commun2021
34670092Progress Identifying and Analyzing the Human Proteome: 2021 Metrics from the HUPO Human Proteome Project.J Proteome Res2021
34183830Universal Spectrum Identifier for mass spectra.Nat Methods2021
34244695Quick-start infrastructure for untargeted metabolomics analysis in GNPS.Nat Metab2021
32405051Reproducible molecular networking of untargeted mass spectrometry data using GNPS.Nat Protoc2020
31686107The ProteomeXchange consortium in 2020: enabling 'big data' approaches in proteomics.Nucleic Acids Res2020
31894142Mass spectrometry searches using MASST.Nat Biotechnol2020
32405051Reproducible molecular networking of untargeted mass spectrometry data using GNPS.Nat Protoc2020
32931287Research on the Human Proteome Reaches a Major Milestone: >90% of Predicted Human Proteins Now Credibly Detected, According to the HUPO Human Proteome Project.J Proteome Res2020
32929271MassIVE.quant: a community resource of quantitative mass spectrometry-based proteomics datasets.Nat Methods2020
32807955ReDU: a framework to find and reanalyze public mass spectrometry data.Nat Methods2020
33067450A high-stringency blueprint of the human proteome.Nat Commun2020
33166149Insights from the First Phosphopeptide Challenge of the MS Resource Pillar of the HUPO Human Proteome Project.J Proteome Res2020
32839597Feature-based molecular networking in the GNPS analysis environment.Nat Methods2020
31894142Mass spectrometry searches using MASST.Nat Biotechnol2020
31686107The ProteomeXchange consortium in 2020: enabling 'big data' approaches in proteomics.Nucleic Acids Res2020
33166149Insights from the First Phosphopeptide Challenge of the MS Resource Pillar of the HUPO Human Proteome Project.J Proteome Res2020
33067450A high-stringency blueprint of the human proteome.Nat Commun2020
32807955ReDU: a framework to find and reanalyze public mass spectrometry data.Nat Methods2020
32931287Research on the Human Proteome Reaches a Major Milestone: >90% of Predicted Human Proteins Now Credibly Detected, According to the HUPO Human Proteome Project.J Proteome Res2020
32929271MassIVE.quant: a community resource of quantitative mass spectrometry-based proteomics datasets.Nat Methods2020
32839597Feature-based molecular networking in the GNPS analysis environment.Nat Methods2020
30554943Interactome Rewiring Following Pharmacological Targeting of BET Bromodomains.Mol Cell2019
31599596Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 3.0.J Proteome Res2019
31551401Molecular and Microbial Microenvironments in Chronically Diseased Lungs Associated with Cystic Fibrosis.mSystems2019
30554943Interactome Rewiring Following Pharmacological Targeting of BET Bromodomains.Mol Cell2019
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Gail Ackermann
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Fernando J Corrales
National Center for Biotechnology
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Ruedi Aebersold
Institute of Molecular Systems Biology, ETH Zurich
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Ileana M Cristea
Princeton University
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Young-Ki Paik
College of Life Sciences and Biotechnology, Yonsei University
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Karl R Clauser
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Release 1.2