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Author Details

Sofie R Salama
Genomics Institute, University of California Santa Cruz
1990
49
28
PMIDPaper TitleJournal TitlePublished Year
37131629Isoform-specific translational control is evolutionarily conserved in primates.bioRxiv2023
37333351Modulation of neuronal activity in cortical organoids with bioelectronic delivery of ions and neurotransmitters.bioRxiv2023
37131629Isoform-specific translational control is evolutionarily conserved in primates.bioRxiv2023
37333351Modulation of neuronal activity in cortical organoids with bioelectronic delivery of ions and neurotransmitters.bioRxiv2023
35220563The Complexity of the Mammalian Transcriptome.Adv Exp Med Biol2022
36139380Cerebral Organoids as an Experimental Platform for Human Neurogenomics.Cells2022
36418910Modular automated microfluidic cell culture platform reduces glycolytic stress in cerebral cortex organoids.Sci Rep2022
36513728Machine learning multi-omics analysis reveals cancer driver dysregulation in pan-cancer cell lines compared to primary tumors.Commun Biol2022
37383277IoT cloud laboratory: Internet of Things architecture for cellular biology.Internet Things (Amst)2022
35220563The Complexity of the Mammalian Transcriptome.Adv Exp Med Biol2022
37383277IoT cloud laboratory: Internet of Things architecture for cellular biology.Internet Things (Amst)2022
36513728Machine learning multi-omics analysis reveals cancer driver dysregulation in pan-cancer cell lines compared to primary tumors.Commun Biol2022
36418910Modular automated microfluidic cell culture platform reduces glycolytic stress in cerebral cortex organoids.Sci Rep2022
36139380Cerebral Organoids as an Experimental Platform for Human Neurogenomics.Cells2022
33953399A high-quality bonobo genome refines the analysis of hominid evolution.Nature2021
33953399A high-quality bonobo genome refines the analysis of hominid evolution.Nature2021
33712853The case for using mapped exonic non-duplicate reads when reporting RNA-sequencing depth: examples from pediatric cancer datasets.Gigascience2021
34737378Picroscope: low-cost system for simultaneous longitudinal biological imaging.Commun Biol2021
34666315Light-weight electrophysiology hardware and software platform for cloud-based neural recording experiments.J Neural Eng2021
33712853The case for using mapped exonic non-duplicate reads when reporting RNA-sequencing depth: examples from pediatric cancer datasets.Gigascience2021
34737378Picroscope: low-cost system for simultaneous longitudinal biological imaging.Commun Biol2021
34666315Light-weight electrophysiology hardware and software platform for cloud-based neural recording experiments.J Neural Eng2021
32686750Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes.Nat Biotechnol2020
33244314ProTECT-Prediction of T-Cell Epitopes for Cancer Therapy.Front Immunol2020
32686750Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes.Nat Biotechnol2020
33283136Complete Response to PD-1 Inhibition in an Adolescent With Relapsed Clear Cell Adenocarcinoma of the Cervix Predicted by Neoepitope Burden and APOBEC Signature.JCO Precis Oncol2020
33335035Sequence diversity analyses of an improved rhesus macaque genome enhance its biomedical utility.Science2020
33283136Complete Response to PD-1 Inhibition in an Adolescent With Relapsed Clear Cell Adenocarcinoma of the Cervix Predicted by Neoepitope Burden and APOBEC Signature.JCO Precis Oncol2020
33335035Sequence diversity analyses of an improved rhesus macaque genome enhance its biomedical utility.Science2020
33244314ProTECT-Prediction of T-Cell Epitopes for Cancer Therapy.Front Immunol2020
30639214Structurally Conserved Primate LncRNAs Are Transiently Expressed during Human Cortical Differentiation and Influence Cell-Type-Specific Genes.Stem Cell Reports2019
31651965Comparative Tumor RNA Sequencing Analysis for Difficult-to-Treat Pediatric and Young Adult Patients With Cancer.JAMA Netw Open2019
31645344Comparative RNA-seq analysis aids in diagnosis of a rare pediatric tumor.Cold Spring Harb Mol Case Stud2019
30639214Structurally Conserved Primate LncRNAs Are Transiently Expressed during Human Cortical Differentiation and Influence Cell-Type-Specific Genes.Stem Cell Reports2019
31222016Barriers to accessing public cancer genomic data.Sci Data2019
30735633Establishing Cerebral Organoids as Models of Human-Specific Brain Evolution.Cell2019
31645344Comparative RNA-seq analysis aids in diagnosis of a rare pediatric tumor.Cold Spring Harb Mol Case Stud2019
31651965Comparative Tumor RNA Sequencing Analysis for Difficult-to-Treat Pediatric and Young Adult Patients With Cancer.JAMA Netw Open2019
31222016Barriers to accessing public cancer genomic data.Sci Data2019
30735633Establishing Cerebral Organoids as Models of Human-Specific Brain Evolution.Cell2019
29441070A Recurrent Mutation in Anaplastic Lymphoma Kinase with Distinct Neoepitope Conformations.Front Immunol2018
29856954Human-Specific NOTCH2NL Genes Affect Notch Signaling and Cortical Neurogenesis.Cell2018
29441070A Recurrent Mutation in Anaplastic Lymphoma Kinase with Distinct Neoepitope Conformations.Front Immunol2018
29642018A Distinct DNA Methylation Shift in a Subset of Glioma CpG Island Methylator Phenotypes during Tumor Recurrence.Cell Rep2018
31372595Comparative RNA-Sequencing Analysis Benefits a Pediatric Patient With Relapsed Cancer.JCO Precis Oncol2018
29856954Human-Specific NOTCH2NL Genes Affect Notch Signaling and Cortical Neurogenesis.Cell2018
31372595Comparative RNA-Sequencing Analysis Benefits a Pediatric Patient With Relapsed Cancer.JCO Precis Oncol2018
29642018A Distinct DNA Methylation Shift in a Subset of Glioma CpG Island Methylator Phenotypes during Tumor Recurrence.Cell Rep2018
29092953TumorMap: Exploring the Molecular Similarities of Cancer Samples in an Interactive Portal.Cancer Res2017
29092953TumorMap: Exploring the Molecular Similarities of Cancer Samples in an Interactive Portal.Cancer Res2017
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Collaborators

David Haussler
Genomics Institute, University of California Santa Cruz
Co-authored papers 33
Sol Katzman
Co-authored papers 12
Jacob Pfeil
UC Santa Cruz Genomics Institute
Co-authored papers 7
Tomasz J Nowakowski
University of California san francisco
Co-authored papers 6
Evan E Eichler
University of Washington
Co-authored papers 5
Katrina Learned
Co-authored papers 5
Marco A Marra
University of British Columbia
Co-authored papers 5
Olena Morozova
University of California Santa Cruz Genomics Institute
Co-authored papers 5
Holly C Beale
Co-authored papers 5
Benedict Paten
UC Santa Cruz Genomics Institute, University of California
Co-authored papers 5
Tom Mikkelsen
Ontario Brain Institute
Co-authored papers 5
Ellen T Kephart
Co-authored papers 5
Ian T Fiddes
Liver Center and Diabetes Center, University of California san francisco
Co-authored papers 5
John Z Sanborn
Co-authored papers 4
Peter W Laird
Van Andel Institute
Co-authored papers 4
Jill S Barnholtz-Sloan
National Cancer Institute
Co-authored papers 4
Houtan Noushmehr
Henry Ford Hospital
Co-authored papers 4
Yulia Newton
University of California, Santa Cruz Genomics Institute
Co-authored papers 4
Andrew D Kern
Co-authored papers 4
Kenneth Aldape
National Cancer Institute
Co-authored papers 4
Adam Siepel
Co-authored papers 4
Theodore C Goldstein
Bakar Computational Health Sciences Institute, University of California san francisco
Co-authored papers 3
Ann Durbin
Co-authored papers 3
Thais S Sabedot
Co-authored papers 3
Mia Grifford
Co-authored papers 3
Roel G W Verhaak
Yale School of Medicine
Co-authored papers 3
E Alejandro Sweet-Cordero
University of California San Francisco
Co-authored papers 3
Teresa Swatloski
University of California
Co-authored papers 3
Wai-Kwan Alfred Yung
University of Texas M.D. Anderson Cancer Center
Co-authored papers 3
Matthew Meyerson
Broad Institute
Co-authored papers 3
Release 1.2