Author details

Full Name

Bas van Steensel

Affiliation

Oncode Institute, Netherlands Cancer Institute

ORCID

Career Start Year

1991

Papers

127

H Index

Expertise

CM4AI Collaborator

Trey Ideker (CM4AI)

PMID	Paper Title	Journal Title	Published Year
37013986	Defining the fine structure of promoter activity on a genome-wide scale with CISSECTOR.	Nucleic Acids Res	2023
37961445	Nucleolus and centromere TSA-Seq reveals variable localization of heterochromatin in different cell types.	bioRxiv	2023
37650627	Optimisation of TP53 reporters by systematic dissection of synthetic TP53 response elements.	Nucleic Acids Res	2023
37733591	Perturbations in 3D genome organization can promote acquired drug resistance.	Cell Rep	2023
37286600	Heritable transcriptional defects from aberrations of nuclear architecture.	Nature	2023
35103970	Genome-Wide Mapping and Microscopy Visualization of Protein-DNA Interactions by pA-DamID.	Methods Mol Biol	2022
35594855	Systematic analysis of intrinsic enhancer-promoter compatibility in the mouse genome.	Mol Cell	2022
35418676	Nonlinear control of transcription through enhancer-promoter interactions.	Nature	2022
36245428	Dynamic chromosomal interactions and control of heterochromatin positioning by Ki-67.	EMBO Rep	2022
36037787	From fluorescent foci to sequence: Illuminating DNA double strand break repair by high-throughput sequencing technologies.	DNA Repair (Amst)	2022
36050765	CTCF and cohesin promote focal detachment of DNA from the nuclear lamina.	Genome Biol	2022
35189475	Lamina-associated domains: Tethers and looseners.	Curr Opin Cell Biol	2022
35173762	Protocol: A Multiplexed Reporter Assay to Study Effects of Chromatin Context on DNA Double-Strand Break Repair.	Front Genet	2022
33446254	SPIN reveals genome-wide landscape of nuclear compartmentalization.	Genome Biol	2021
33715389	m6A methylation potentiates cytosolic dsDNA recognition in a sequence-specific manner.	Open Biol	2021
34045355	3D genomics across the tree of life reveals condensin II as a determinant of architecture type.	Science	2021
32208159	Phosphorylated Lamins in Euchromatin: New Clues to Progeria.	Dev Cell	2020
31727407	Deciphering Gene Regulation Using Massively Parallel Reporter Assays.	Trends Biochem Sci	2020
32080885	Local rewiring of genome-nuclear lamina interactions by transcription.	EMBO J	2020
32893442	Cell cycle dynamics of lamina-associated DNA.	EMBO Rep	2020
30912038	Rapid Quantitative Evaluation of CRISPR Genome Editing by TIDE and TIDER.	Methods Mol Biol	2019
31253979	High-throughput identification of human SNPs affecting regulatory element activity.	Nat Genet	2019
30982597	Promoter-Intrinsic and Local Chromatin Features Determine Gene Repression in LADs.	Cell	2019
30886333	The role of transcription in shaping the spatial organization of the genome.	Nat Rev Mol Cell Biol	2019
29538768	Easy quantification of template-directed CRISPR/Cas9 editing.	Nucleic Acids Res	2018
29804829	Kinetics and Fidelity of the Repair of Cas9-Induced Double-Strand DNA Breaks.	Mol Cell	2018
30158143	Scientific honesty and publicly shared lab notebooks: Sharing lab notebooks along with publication would increase transparency and help to improve honesty when reporting results.	EMBO Rep	2018
29970137	Correction to: DamID profiling of dynamic Polycomb-binding sites in Drosophila imaginal disc development and tumorigenesis.	Epigenetics Chromatin	2018
30154186	Mapping 3D genome organization relative to nuclear compartments using TSA-Seq as a cytological ruler.	J Cell Biol	2018
29871666	DamID profiling of dynamic Polycomb-binding sites in Drosophila imaginal disc development and tumorigenesis.	Epigenetics Chromatin	2018
30456345	CHRAC/ACF contribute to the repressive ground state of chromatin.	Life Sci Alliance	2018
30384843	The large fraction of heterochromatin in Drosophila neurons is bound by both B-type lamin and HP1a.	Epigenetics Chromatin	2018
28024146	Genome-wide mapping of autonomous promoter activity in human cells.	Nat Biotechnol	2017
28107752	Genome-nuclear lamina interactions: from cell populations to single cells.	Curr Opin Genet Dev	2017
28431229	Functional Enhancer Screening in Single Cells.	Mol Cell	2017
28475897	The Cohesin Release Factor WAPL Restricts Chromatin Loop Extension.	Cell	2017
28420691	Clustering of <i>Drosophila</i> housekeeping promoters facilitates their expression.	Genome Res	2017
28341771	Small chromosomal regions position themselves autonomously according to their chromatin class.	Genome Res	2017
28916540	Massive reshaping of genome-nuclear lamina interactions during oncogene-induced senescence.	Genome Res	2017
28771467	Comprehensive analysis of nucleocytoplasmic dynamics of mRNA in Drosophila cells.	PLoS Genet	2017
28525751	Lamina-Associated Domains: Links with Chromosome Architecture, Heterochromatin, and Gene Repression.	Cell	2017
27001518	Inducible DamID systems for genomic mapping of chromatin proteins in Drosophila.	Nucleic Acids Res	2016
26633627	Corrigendum: Domains of genome-wide gene expression dysregulation in Down's syndrome.	Nature	2016
27777628	High-throughput assessment of context-dependent effects of chromatin proteins.	Epigenetics Chromatin	2016
27474442	A single double-strand break system reveals repair dynamics and mechanisms in heterochromatin and euchromatin.	Genes Dev	2016
25778915	A short guide to technology development in cell biology.	J Cell Biol	2015
26365489	Genome-wide maps of nuclear lamina interactions in single human cells.	Cell	2015
26113708	GENE REGULATION. A HUSH for transgene expression.	Science	2015
25811898	Corrigendum: using TRIP for genome-wide position effect analysis in cultured cells.	Nat Protoc	2015
25784758	Nuclear lamins are not required for lamina-associated domain organization in mouse embryonic stem cells.	EMBO Rep	2015

1 - 50 of 127

Greg Donahue

Penn Epigenetics Institute, Perelman School of Medicine, University of Pennsylvania

Career Start Year 2010

Number of shared co-authors 0

Chongzhi Zang

Center for Public Health Genomics, University of Virginia

Career Start Year 2008

Number of shared co-authors 0

Lingyun Song

Center for Genomic & Computational Biology, Duke University

Career Start Year 2004

Number of shared co-authors 7

Alexias Safi

Center for Genomic and Computational Biology, Duke University Medical Center

Career Start Year 2003

Number of shared co-authors 5

Paul G Giresi

Center for Personal Dynamic Regulomes

Career Start Year 2003

Number of shared co-authors 9

Michael J Buck

Jacobs School of Medicine and Biomedical Sciences, University at Buffalo

Career Start Year 2002

Number of shared co-authors 0

Ho-Ryun Chung

Institute of Medical Bioinformatics and Biostatistics, Philipps University of Marburg

Career Start Year 2002

Number of shared co-authors 4

Amos Tanay

Weizmann Institute of Science

Career Start Year 2001

Number of shared co-authors 5

Michael Y Tolstorukov

Dana-Farber Cancer Institute

Career Start Year 2000

Number of shared co-authors 6

Benjamin P Berman

Institute for Medical Research Israel-Canada, The Hebrew University of Jerusalem

Career Start Year 2000

Number of shared co-authors 2

Yoichiro Shibata

Center for Genomic and Computational Biology, Duke University.

Career Start Year 2000

Number of shared co-authors 2

Duncan T Odom

Cancer Research UK Cambridge Institute, University of Cambridge

Career Start Year 1999

Number of shared co-authors 5

Gregory E Crawford

Center for Genomic & Computational Biology, Duke University

Career Start Year 1999

Number of shared co-authors 10

Siavash K Kurdistani

David Geffen School of Medicine, University of California los angeles

Career Start Year 1998

Number of shared co-authors 1

Michael-Christopher Keogh

EpiCypher Inc.

Career Start Year 1997

Number of shared co-authors 1

Jason D Lieb

The University of Chicago

Career Start Year 1996

Number of shared co-authors 12

Brian D Strahl

University of North Carolina

Career Start Year 1996

Number of shared co-authors 3

Bing Ren

Center for Epigenomics, University of California San Diego

Career Start Year 1995

Number of shared co-authors 14

Colin Logie

Radboud Institute for Molecular Science, Radboud University

Career Start Year 1995

Number of shared co-authors 1

Vishwanath R Iyer

Indian Institute of Technology Bombay

Career Start Year 1995

Number of shared co-authors 10

Oliver J Rando

University of Massachusetts Chan Medical School

Career Start Year 1994

Number of shared co-authors 5

Ana Pombo

Polytechnic Institute of Leiria

Career Start Year 1994

Number of shared co-authors 3

Bradley E Bernstein

Broad Institute of MIT and Harvard

Career Start Year 1994

Number of shared co-authors 10

Raffaella Santoro

University of Zurich

Career Start Year 1991

Number of shared co-authors 0

Ali Shilatifard

Northwestern University Feinberg School of Medicine

Career Start Year 1991

Number of shared co-authors 3

Valerio Orlando

King Abdullah University of Science and Technology (KAUST)

Career Start Year 1991

Number of shared co-authors 2

Sam John

National Cancer Institute

Career Start Year 1990

Number of shared co-authors 6

Shelley L Berger

Penn Epigenetics Institute, Perelman School of Medicine

Career Start Year 1985

Number of shared co-authors 0

Susan M Gasser

L'Institut Suisse de Recherche Experimentale sur le Cancer (ISREC) Foundation

Career Start Year 1982

Number of shared co-authors 4

Danny Reinberg

HHMI/NYU Langone School of Medicine

Career Start Year 1980

Number of shared co-authors 4

row(s) 1 - 30 of 30

Harmen J Bussemaker

Co-authored papers 12

Guillaume J Filion

University of Toronto Scarborough

Co-authored papers 6

Lodewyk F A Wessels

University Medical Centre Mannheim, University of Heidelberg

Co-authored papers 6

Steven Henikoff

Fred Hutchinson Cancer Center

Co-authored papers 6

Jeffrey J Delrow

Clinical Research Division, Fred Hutchinson Cancer Research Center

Co-authored papers 6

Joke G van Bemmel

Institut Curie, PSL Research University, CNRS UMR3215, INSERM U934

Co-authored papers 5

Ulrich Braunschweig

University of Toronto

Co-authored papers 5

Andrew S Belmont

Co-authored papers 4

Jian Ma

Co-authored papers 3

David M Gilbert

Co-authored papers 3

Federico Santoni

Co-authored papers 2

Stylianos E Antonarakis

Co-authored papers 2

Andrea Cosolo

Co-authored papers 2

Yann Herault

Institut Clinique de la Souris (ICS), Universite de Strasbourg, CNRS, INSERM

Co-authored papers 2

Richard Sandstrom

Altius Institute for Biomedical Sciences

Co-authored papers 2

Roderic Guig??

Barcelona Institute of Science and Technology

Co-authored papers 2

Lucas D Ward

Co-authored papers 2

Robert E Thurman

University of Washington

Co-authored papers 2

Job Dekker

University of Massachusetts Chan Medical School

Co-authored papers 2

Fred van Leeuwen

Netherlands Cancer Institute, University of Amsterdam

Co-authored papers 2

Agata Smogorzewska

Instituto de Investigacion Sanitaria Hospital 12 de Octubre (imas12)

Co-authored papers 2

John A Stamatoyannopoulos

Altius Institute for Biomedical Sciences

Co-authored papers 2

Kevin P White

Co-authored papers 2

Jos Jonkers

Oncode Institute, Netherlands Cancer Institute

Co-authored papers 1

Fidel Ram??rez

Max Planck Institute of Immunobiology and Epigenetics

Co-authored papers 1

Ranjit S Bindra

Yale University School of Medicine

Co-authored papers 1

Michiel E Adriaens

Maastricht University

Co-authored papers 1

Guido Jenster

Erasmus University Medical Center

Co-authored papers 1

Eleanor Williams

University of Dundee

Co-authored papers 1

Gary H Karpen

University of California Berkeley

Co-authored papers 1

1 - 30

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