Author details

Full Name

Anne E Thessen

Affiliation

Biodiversity Information Standards, Coastal and Estuarine Research Federation, Oregon State University, Phycological Society of America, Society of Professional Consultants, The Data Detektiv, University of Colorado Anschutz Medical Campus, University of Maryland College Park, Women in the Enterprise of Science and Technology

ORCID

0000-0002-2908-3327

Career Start Year

2010

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36823605	The Environmental Conditions, Treatments, and Exposures Ontology (ECTO): connecting toxicology and exposure to human health and beyond.	J Biomed Semantics	2023
37900350	An approach for collaborative development of a federated biomedical knowledge graph-based question-answering system: Question-of-the-Month challenges.	J Clin Transl Sci	2023
37971715	Data sharing andÂ ontology use among agricultural genetics, genomics, andÂ breeding databases andÂ resources ofÂ the Agbiodata Consortium.	Database (Oxford)	2023
37389415	KG-Hub-building and exchanging biological knowledge graphs.	Bioinformatics	2023
37384147	Using knowledge graphs to infer gene expression in plants.	Front Artif Intell	2023
36944655	The Superfund Research Program Analytics Portal: linking environmental chemical exposure to biological phenotypes.	Sci Data	2023
37076585	The Ontology of Biological Attributes (OBA)-computational traits for the life sciences.	Mamm Genome	2023
36747660	The Ontology of Biological Attributes (OBA) - Computational Traits for the Life Sciences.	bioRxiv	2023
36767684	Workshop Report: Catalyzing Knowledge-Driven Discovery in Environmental Health Sciences through a Harmonized Language.	Int J Environ Res Public Health	2023
35387429	Implementation of Zebrafish Ontologies for Toxicology Screening.	Front Toxicol	2022
35616100	A Simple Standard for Sharing Ontological Mappings (SSSOM).	Database (Oxford)	2022
35611543	Progress toward a universal biomedical data translator.	Clin Transl Sci	2022
34501574	Catalyzing Knowledge-Driven Discovery in Environmental Health Sciences through a Community-Driven Harmonized Language.	Int J Environ Res Public Health	2021
33770077	From Reductionism to Reintegration: Solving society's most pressing problems requires building bridges between data types across the life sciences.	PLoS Biol	2021
33494105	The landscape of nutri-informatics: a review of current resources and challenges for integrative nutrition research.	Database (Oxford)	2021
32821528	A novel curation system to facilitate data integration across regional citizen science survey programs.	PeerJ	2020
33369481	Community Approaches for Integrating Environmental Exposures into Human Models of Disease.	Environ Health Perspect	2020
33439246	People are essential to linking biodiversity data.	Database (Oxford)	2020
33232313	Transforming the study of organisms: Phenomic data models and knowledge bases.	PLoS Comput Biol	2020
30532623	Modifier Ontologies for frequency, certainty, degree, and coverage phenotype modifier.	Biodivers Data J	2018
33816817	20 GB in 10 minutes: a case for linking major biodiversity databases using an open socio-technical infrastructure and a pragmatic, cross-institutional collaboration.	PeerJ Comput Sci	2018
30345023	A new paradigm for the scientific enterprise: nurturing the ecosystem.	F1000Res	2018
28645762	Calculating in situ degradation rates of hydrocarbon compounds in deep waters of the Gulf of Mexico.	Mar Pollut Bull	2017
28437440	Synthesizer: Expediting synthesis studies from context-free data with information retrieval techniques.	PLoS One	2017
27346955	Challenges with using names to link digital biodiversity information.	Biodivers Data J	2016
25562316	Finding our way through phenotypes.	PLoS Biol	2015
26713234	Emerging semantics to link phenotype and environment.	PeerJ	2015
24594988	Knowledge extraction and semantic annotation of text from the encyclopedia of life.	PLoS One	2014
25548736	A statistical assessment of population trends for data deficient Mexican amphibians.	PeerJ	2014
22685456	Applications of natural language processing in biodiversity science.	Adv Bioinformatics	2012
22940223	Transcriptomics and microbial eukaryote diversity: a way forward.	Trends Ecol Evol	2012
22952856	The taxonomic significance of species that have only been observed once: the genus Gymnodinium (Dinoflagellata) as an example.	PLoS One	2012
22207805	Data issues in the life sciences.	Zookeys	2011
19835902	Crassostrea virginica grazing on toxic and non-toxic diatoms.	Toxicon	2010
21304729	Meeting Report: BioSharing at ISMB 2010.	Stand Genomic Sci	2010

1 - 35 of 35

Damion Dooley

Simon Fraser University

Career Start Year 2016

Number of shared co-authors 17

Katharine B Barker

Auburn University.

Career Start Year 2013

Number of shared co-authors 12

John Deck

University of California berkeley

Career Start Year 2012

Number of shared co-authors 26

Bastian Greshake Tzovaras

Universite Paris Cite, Inserm

Career Start Year 2012

Number of shared co-authors 5

Jie Zheng

University of Pennsylvania Perelman School of Medicine

Career Start Year 2010

Number of shared co-authors 27

Alan R Williams

The University of Manchester

Career Start Year 2010

Number of shared co-authors 19

Prashanti Manda

University of North Carolina at Greensboro

Career Start Year 2009

Number of shared co-authors 12

Alejandra Gonzalez-Beltran

Oxford e-Research Centre, University of Oxford

Career Start Year 2009

Number of shared co-authors 27

Janna Hastings

Institute for Implementation Science in Health Care, University of Zurich

Career Start Year 2008

Number of shared co-authors 15

Mark P Schildhauer

National Center for Ecological Analysis and Synthesis

Career Start Year 2008

Number of shared co-authors 8

Evangelos Pafilis

Institute of Marine Biology

Career Start Year 2007

Number of shared co-authors 27

Sabina Leonelli

University of Exeter

Career Start Year 2007

Number of shared co-authors 5

Norman Morrison

European Bioinformatics Institute

Career Start Year 2001

Number of shared co-authors 40

Indra Neil Sarkar

Center for Biomedical Informatics, Brown University

Career Start Year 2001

Number of shared co-authors 2

Tony Burdett

European Bioinformatics Institute

Career Start Year 2000

Number of shared co-authors 24

Marco Roos

Leiden University Medical Center

Career Start Year 1999

Number of shared co-authors 20

C Titus Brown

University of California davis

Career Start Year 1999

Number of shared co-authors 10

Andra Waagmeester

Maastricht University

Career Start Year 1998

Number of shared co-authors 12

Robert Stevens

The University of Manchester

Career Start Year 1998

Number of shared co-authors 17

Lynn M Schriml

University of Maryland School of Medicine, Institute for Genome Sciences

Career Start Year 1998

Number of shared co-authors 54

Nick Juty

University of Manchester

Career Start Year 1997

Number of shared co-authors 21

Katherine Wolstencroft

Leiden Institute of Advanced Computer Science, Leiden University

Career Start Year 1997

Number of shared co-authors 19

Nirav Merchant

Data Science Institute, University of Arizona

Career Start Year 1995

Number of shared co-authors 3

Lawrence E Hunter

University of Colorado School of Medicine

Career Start Year 1993

Number of shared co-authors 7

Carole Goble

University of Manchester

Career Start Year 1993

Number of shared co-authors 30

Mark D Wilkinson

Universidad Politecnica de Madrid (UPM)

Career Start Year 1993

Number of shared co-authors 13

Phillip Lord

Newcastle University

Career Start Year 1991

Number of shared co-authors 25

Jonas S Almeida

National Cancer Institute (NCI)

Career Start Year 1990

Number of shared co-authors 0

Lincoln Stein

Ontario Institute for Cancer Research, University Avenue

Career Start Year 1986

Number of shared co-authors 23

Martin Kuiper

Norwegian University of Science and Technology

Career Start Year 1983

Number of shared co-authors 17

row(s) 1 - 30 of 30

Melissa A Haendel

American Medical Informatics Association, Oregon Health and Science University, Oregon State University, University of Colorado Anschutz Medical Campus, University of North Carolina at Chapel Hill, University of Wisconsin-Madison

Co-authored papers 10

Melissa A Haendel

Co-authored papers 10

Christopher J Mungall

International Society for Biocuration, Lawrence Berkeley National Laboratory, University of Edinburgh, University of Edinburgh School of Biological Sciences

Co-authored papers 9

Nicole Vasilevsky

Critical Path Institute

Co-authored papers 6

Julie A McMurry

University of Colorado - Anschutz Medical Campus

Co-authored papers 5

Nomi L Harris

Lawrence Berkely National Laboratory, Massachusetts Institute of Technology, Princeton University

Co-authored papers 5

James P Balhoff

Renaissance Computing Institute, University of North Carolina