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Author Details

Miguel A Andrade-Navarro
Institute of Organismic and Molecular Evolution, Johannes Gutenberg University
1991
272
58
Nevan J Krogan (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
35997788Expression and subcellular localization of USH1C/harmonin in human retina provides insights into pathomechanisms and therapy.Hum Mol Genet2023
38022702The nucleotide landscape of polyXY regions.Comput Struct Biotechnol J2023
37481073Circulating microRNAs predict recurrence and death following venous thromboembolism.J Thromb Haemost2023
37652396A STRP-ed definition of Structured Tandem Repeats in Proteins.J Struct Biol2023
37509152Evolutionary Study of Protein Short Tandem Repeats in Protein Families.Biomolecules2023
37833283The importance of planning CT-based imaging features for machine learning-based prediction of pain response.Sci Rep2023
37924569Structure-function relationships in protein homorepeats.Curr Opin Struct Biol2023
37762354Selection of Multi-Drug Targets against Drug-Resistant <i>Mycobacterium tuberculosis</i> XDR1219 Using the Hyperbolic Mapping of the Protein Interaction Network.Int J Mol Sci2023
37761851One Step Closer to the Understanding of the Relationship IDR-LCR-Structure.Genes (Basel)2023
36991458DNA methylation and cardiovascular disease in humans: a systematic review and database of known CpG methylation sites.Clin Epigenetics2023
37253308Development of a next-generation endogenous OCT4 inducer and its anti-aging effect in vivo.Eur J Med Chem2023
37083045The transcriptional co-activator Yap1 promotes adult hippocampal neural stem cell activation.EMBO J2023
37046811Development and Evaluation of MR-Based Radiogenomic Models to Differentiate Atypical Lipomatous Tumors from Lipomas.Cancers (Basel)2023
37344523Phase separating Rho: a widespread regulatory function of disordered regions in proteins revealed in bacteria.Signal Transduct Target Ther2023
37031868Protein repeats evolve and emerge in giant viruses.J Struct Biol2023
36961900Analysis of bacterial pangenomes reduces CRISPR dark matter and reveals strong association between membranome and CRISPR-Cas systems.Sci Adv2023
34903641DNMT1 Deficiency Impacts on Plasmacytoid Dendritic Cells in Homeostasis and Autoimmune Disease.J Immunol2022
35679295Detection of features predictive of microRNA targets by integration of network data.PLoS One2022
35836114Batch effect detection and correction in RNA-seq data using machine-learning-based automated assessment of quality.BMC Bioinformatics2022
35697739Association of FXI activity with thrombo-inflammation, extracellular matrix, lipid metabolism and apoptosis in venous thrombosis.Sci Rep2022
35628660Analysis of Huntington's Disease Modifiers Using the Hyperbolic Mapping of the Protein Interaction Network.Int J Mol Sci2022
35627304Annotation and Analysis of 3902 Odorant Receptor Protein Sequences from 21 Insect Species Provide Insights into the Evolution of Odorant Receptor Gene Families in Solitary and Social Insects.Genes (Basel)2022
35627143PolyX2: Fast Detection of Homorepeats in Large Protein Datasets.Genes (Basel)2022
35421971Autophagy modulating therapeutics inhibit ovarian cancer colony generation by polyploid giant cancer cells (PGCCs).BMC Cancer2022
35776722Single-cell specific and interpretable machine learning models for sparse scChIP-seq data imputation.PLoS One2022
36249567Regions with two amino acids in protein sequences: A step forward from homorepeats into the low complexity landscape.Comput Struct Biotechnol J2022
36106994The sequence context in poly-alanine regions: structure, function and conservation.Bioinformatics2022
36291695Functional Tuning of Intrinsically Disordered Regions in Human Proteins by Composition Bias.Biomolecules2022
36008992Low Complexity Induces Structure in Protein Regions Predicted as Intrinsically Disordered.Biomolecules2022
33237313RepeatsDB in 2021: improved data and extended classification for protein tandem repeat structures.Nucleic Acids Res2021
33572172The Role of Low Complexity Regions in Protein Interaction Modes: An Illustration in Huntingtin.Int J Mol Sci2021
33510296Author Correction: Loss-of-function uORF mutations in human malignancies.Sci Rep2021
33673854seqQscorer: automated quality control of next-generation sequencing data using machine learning.Genome Biol2021
33809982The Conservation of Low Complexity Regions in Bacterial Proteins Depends on the Pathogenicity of the Strain and Subcellular Location of the Protein.Genes (Basel)2021
33805436DiseaseLinc: Disease Enrichment Analysis of Sets of Differentially Expressed LincRNAs.Cells2021
33529319Protein expression profiling suggests relevance of noncanonical pathways in isolated pulmonary embolism.Blood2021
33660494Avoided motifs: short amino acid strings missing from protein datasets.Biol Chem2021
34791220Between Interactions and Aggregates: The PolyQ Balance.Genome Biol Evol2021
34462322Statistical guidelines for quality control of next-generation sequencing techniques.Life Sci Alliance2021
34358314LipiDisease: associate lipids to diseases using literature mining.Bioinformatics2021
34309635A targeted proteomics investigation of the obesity paradox in venous thromboembolism.Blood Adv2021
34192830Bioinformatics in theory and application - highlights of the 36th German Conference on Bioinformatics.Biol Chem2021
34165708A Methodology to Study Pseudogenized lincRNAs.Methods Mol Biol2021
33972020REP2: A Web Server to Detect Common Tandem Repeats in Protein Sequences.J Mol Biol2021
30698641Disentangling the complexity of low complexity proteins.Brief Bioinform2020
31816285The developmental transcriptome for Lytechinus variegatus exhibits temporally punctuated gene expression changes.Dev Biol2020
32071707The importance of definitions in the study of polyQ regions: A tale of thresholds, impurities and sequence context.Comput Struct Biotechnol J2020
31797607Towards identifying drug side effects from social media using active learning and crowd sourcing.Pac Symp Biocomput2020
33378336Assessing the low complexity of protein sequences via the low complexity triangle.PLoS One2020
33315883Missing value imputation in proximity extension assay-based targeted proteomics data.PLoS One2020
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Collaborators

Peer Bork
University of Wurzburg
Co-authored papers 22
Alfonso Valencia
Josep Carreras Leukaemia Research Institute (IJC)
Co-authored papers 15
Chris Sander
Broad Institute of MIT and Harvard
Co-authored papers 12
Gareth A Palidwor
Ottawa Hospital Research Institute
Co-authored papers 12
Luis Sanchez-Pulido
MRC Institute of Genetics and Molecular Medicine at the University of Edinburgh
Co-authored papers 11
Christopher J Porter
Ottawa Hospital Research Institute
Co-authored papers 7
Silvio C E Tosatto
University of Padova
Co-authored papers 7
Paul M Krzyzanowski
Ontario Institute for Cancer Research
Co-authored papers 7
Philipp S Wild
Co-authored papers 7
Jonas Ibn-Salem
Max-Planck Institute for Molecular Genetics, Johannes Gutenberg University of Mainz
Co-authored papers 6
Damiano Piovesan
University of Padova
Co-authored papers 6
Burkhard Rost
Technical University of Munich (TUM)
Co-authored papers 4
Zsuzsanna Dosztányi
Co-authored papers 4
Frank Rosenbauer
University Munster
Co-authored papers 4
Stefan W??lfl
Institute of Pharmacy and Molecular Biotechnology, Heidelberg University
Co-authored papers 4
Pablo Porras
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 4
Antoine de Daruvar
Co-authored papers 4
Chris P Ponting
The University of Edinburgh
Co-authored papers 3
Reinhard Schneider
Co-authored papers 3
Marco Necci
Co-authored papers 3
Norbert H??bner
Max Delbruck Center for Molecular Medicine in the Helmholtz Association (MDC)
Co-authored papers 2
Wolfgang E Berdel
University Hospital Munster
Co-authored papers 2
Christian Blaschke
University of Otago
Co-authored papers 2
Gabriele Neumann
Influenza Research Institute, University of Wisconsin-Madison
Co-authored papers 2
John H Doonan
University of Copenhagen
Co-authored papers 2
Fritz Lekschas
Co-authored papers 2
Hiroaki Kitano
Co-authored papers 2
Elisa Donnard
Co-authored papers 2
Claus Nerlov
MRC Weatherall Institute of Molecular Medicine, University of Oxford
Co-authored papers 2
Arvind Singh Mer
University of Ottawa
Co-authored papers 2
Release 1.2