Author details

Full Name

Alex A Freitas

Affiliation

University of Kent

ORCID

Career Start Year

2000

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36318566	Interpretable Ensembles of Classifiers for Uncertain Data With Bioinformatics Applications.	IEEE/ACM Trans Comput Biol Bioinform	2023
37450404	Predicting lifespan-extending chemical compounds for <i>C. elegans</i> with machine learning and biologically interpretable features.	Aging (Albany NY)	2023
34983372	Machine learning-based predictions of dietary restriction associations across ageing-related genes.	BMC Bioinformatics	2022
32324561	A Novel Feature Selection Method for Uncertain Features: An Application to the Prediction of Pro-/Anti-Longevity Genes.	IEEE/ACM Trans Comput Biol Bioinform	2021
33611312	Ageing transcriptome meta-analysis reveals similarities and differences between key mammalian tissues.	Aging (Albany NY)	2021
30629111	Investigating the role of Simpson's paradox in the analysis of top-ranked features in high-dimensional bioinformatics datasets.	Brief Bioinform	2020
31845988	Using deep learning to associate human genes with age-related diseases.	Bioinformatics	2020
30895300	Comparing enrichment analysis and machine learning for identifying gene properties that discriminate between gene classes.	Brief Bioinform	2020
31744546	The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens.	Genome Biol	2019
29462247	A new approach for interpreting Random Forest models and its application to the biology of ageing.	Bioinformatics	2018
28783712	Machine learning for predicting lifespan-extending chemical compounds.	Aging (Albany NY)	2017
28265788	A review of supervised machine learning applied to ageing research.	Biogerontology	2017
26066807	Improving the Interpretability of Classification Rules Discovered by an Ant Colony Algorithm: Extended Results.	Evol Comput	2016
28175300	Systematic analysis of the gerontome reveals links between aging and age-related diseases.	Hum Mol Genet	2016
26661786	An Extensive Empirical Comparison of Probabilistic Hierarchical Classifiers in Datasets of Ageing-Related Genes.	IEEE/ACM Trans Comput Biol Bioinform	2016
27582431	Simultaneous Prediction of four ATP-binding Cassette Transporters' Substrates Using Multi-label QSAR.	Mol Inform	2016
27318209	New KEGG pathway-based interpretable features for classifying ageing-related mouse proteins.	Bioinformatics	2016
25397721	Comparing multilabel classification methods for provisional biopharmaceutics class prediction.	Mol Pharm	2015
26357215	Predicting the Pro-Longevity or Anti-Longevity Effect of Model Organism Genes with New Hierarchical Feature Selection Methods.	IEEE/ACM Trans Comput Biol Bioinform	2015
25767566	Predicting volume of distribution with decision tree-based regression methods using predicted tissue:plasma partition coefficients.	J Cheminform	2015
25528330	Decision trees to characterise the roles of permeability and solubility on the prediction of oral absorption.	Eur J Med Chem	2015
23293925	Coping with unbalanced class data sets in oral absorption models.	J Chem Inf Model	2013
24050619	Pre-processing feature selection for improved C&RT models for oral absorption.	J Chem Inf Model	2013
23339552	Automatic design of decision-tree algorithms with evolutionary algorithms.	Evol Comput	2013
22868233	The impact of training set data distributions for modelling of passive intestinal absorption.	Int J Pharm	2012
21226956	A data mining approach for classifying DNA repair genes into ageing-related or non-ageing-related.	BMC Genomics	2011
21600302	A review and appraisal of the DNA damage theory of ageing.	Mutat Res	2011
21470173	Present perspectives on the automated classification of the G-protein coupled receptors (GPCRs) at the protein sequence level.	Curr Top Med Chem	2011
20423020	Hierarchical classification of G-protein-coupled receptors with data-driven selection of attributes and classifiers.	Int J Data Min Bioinform	2010
20150679	On the importance of comprehensible classification models for protein function prediction.	IEEE/ACM Trans Comput Biol Bioinform	2010
18641010	Message-passing algorithms for the prediction of protein domain interactions from protein-protein interaction data.	Bioinformatics	2008
19104544	Robust autonomous detection of the defective pixels in detectors using a probabilistic technique.	Appl Opt	2008
18717986	GPCRTree: online hierarchical classification of GPCR function.	BMC Res Notes	2008
18676973	Optimizing amino acid groupings for GPCR classification.	Bioinformatics	2008
17639603	Proteomic applications of automated GPCR classification.	Proteomics	2007
17956878	On the hierarchical classification of G protein-coupled receptors.	Bioinformatics	2007
16204101	Predicting post-synaptic activity in proteins with data mining.	Bioinformatics	2005
14684263	A constrained-syntax genetic programming system for discovering classification rules: application to medical data sets.	Artif Intell Med	2004
10916731	Genetic programming for knowledge discovery in chest-pain diagnosis.	IEEE Eng Med Biol Mag	2000

1 - 39 of 39

Yuanfang Guan

University of Michigan ann arbor

Career Start Year 2007

Number of shared co-authors 3

Artem Sokolov

Harvard Medical School

Career Start Year 2006

Number of shared co-authors 36

Khader Shameer

School of Public Health, Imperial College London

Career Start Year 2006

Number of shared co-authors 0

Doheon Lee

Korea Advanced Institute of Science and Technology

Career Start Year 2004

Number of shared co-authors 1

Dario Malchiodi

Data Science Research CenterUniversita degli Studi di Milano 20133 Milan Italy.

Career Start Year 2004

Number of shared co-authors 2

Yen-Jen Oyang

Graduate Institute of Networking and Multimedia, National Taiwan University

Career Start Year 2004

Number of shared co-authors 1

Holger Fr??hlich

Bonn-Aachen International Center for IT (B-IT), University of Bonn

Career Start Year 2004

Number of shared co-authors 2

Wenjin Jim Zheng

University of Texas Health Science Center at Houston

Career Start Year 2004

Number of shared co-authors 0

Giuseppe Jurman

Data Science for Health Research Unit, Bruno Kessler Foundation

Career Start Year 2003

Number of shared co-authors 2

Tapio Pahikkala

University of Turku

Career Start Year 2003

Number of shared co-authors 4

George Karypis

University of Minnesota

Career Start Year 2003

Number of shared co-authors 0

J??rg Rahnenf??hrer

TU Dortmund University

Career Start Year 2002

Number of shared co-authors 0

Assaf Gottlieb

Center for Precision Health, University of Texas Health Science Center at Houston

Career Start Year 2002

Number of shared co-authors 2

Gil Alterovitz

Brigham and Women's Hospital

Career Start Year 2002

Number of shared co-authors 0

Chun-Nan Hsu

University of California, C.N.H.) and Veterans Affairs San Diego Healthcare System

Career Start Year 2001

Number of shared co-authors 1

Alioune Ngom

University of Windsor

Career Start Year 2001

Number of shared co-authors 1

P??draig Cunningham

University College Dublin

Career Start Year 2000

Number of shared co-authors 0

Gaurav Pandey

Sanjay Gandhi Post Graduate Institute of Medical Sciences

Career Start Year 1999

Number of shared co-authors 39

Tero Aittokallio

Institute for Molecular Medicine Finland (FIMM), University of Helsinki

Career Start Year 1999

Number of shared co-authors 1

Blaz Zupan

University of Ljubljana

Career Start Year 1998

Number of shared co-authors 1

Zoran Obradovic

Center for Data Analytics and Biomedical Informatics, Temple University

Career Start Year 1998

Number of shared co-authors 5

Jung-Hsien Chiang

National Cheng Kung University

Career Start Year 1997

Number of shared co-authors 0

Georg Fuellen

Rostock University Medical Center

Career Start Year 1996

Number of shared co-authors 1

Cesare Furlanello

Bruno Kessler Foundation

Career Start Year 1996

Number of shared co-authors 3

Hiroshi Mamitsuka

Institute for Chemical Research, Kyoto University

Career Start Year 1994

Number of shared co-authors 2

Constantin F Aliferis

Institute for Health Informatics, University of Minnesota

Career Start Year 1993

Number of shared co-authors 0

Bart De Moor

STADIUS Center for Dynamical Systems

Career Start Year 1990

Number of shared co-authors 0

S??ren Brunak

Novo Nordisk Foundation Center for Protein Research, University of Copenhagen

Career Start Year 1988

Number of shared co-authors 13

Alfonso Valencia

Josep Carreras Leukaemia Research Institute (IJC)

Career Start Year 1986

Number of shared co-authors 67

Yves Moreau

KU Leuven - University of Leuven

Career Start Year 1967

Number of shared co-authors 66

row(s) 1 - 30 of 30

Fabio Fabris

University of Kent

Co-authored papers 9

Danielle Newby

Warneford Hospital, University of Oxford

Co-authored papers 6

Cen Wan

University College London

Co-authored papers 3

Naihui Zhou

The First Affiliated Hospital of Soochow University

Co-authored papers 1

Peter L Freddolino

University of Michigan ann arbor

Co-authored papers 1

Prajwal Bhat

Royal Holloway University of London

Co-authored papers 1

Itamar Borukhov

Institute of Biotechnology, University of Helsinki

Co-authored papers 1

Maria J Martin

European Bioinformatics Institute (EMBL-EBI)

Co-authored papers 1

Md Nafiz Hamid

Iowa State University

Co-authored papers 1

Larry Davis

Co-authored papers 1

Radoslav Davidovic

Institute of Nuclear Sciences Vinca, University of Belgrade

Co-authored papers 1

Mohammad R K Mofrad

University of California Berkeley

Co-authored papers 1

Sa??o D??eroski

Jozef Stefan Institute

Co-authored papers 1

Domenico Cozzetto

Imperial College London

Co-authored papers 1

Marco Mesiti

Universita degli Studi di Milano

Co-authored papers 1

Neven Sumonja

Institute of Nuclear Sciences VINCA, University of Belgrade

Co-authored papers 1

Magdalena Kotlicka-Antczak

Medical University of Lodz

Co-authored papers 1

Alan J Medlar

Co-authored papers 1

Rui Fa

University College London

Co-authored papers 1

Sabeur Aridhi

Universite de Lorraine, CNRS

Co-authored papers 1

Qizhong Mao

Temple University

Co-authored papers 1

David S Moss

Institute of Structural and Molecular Biology, University of London

Co-authored papers 1

Wei-Cheng Tseng

Taipei Veterans General Hospital

Co-authored papers 1

Christophe Dessimoz

University of Lausanne

Co-authored papers 1

Gage S Black

Brigham Young University

Co-authored papers 1

Suyang Dai

Fudan University

Co-authored papers 1

Maxat Kulmanov

King Abdullah University of Science and Technology.

Co-authored papers 1

Kai Hakala

University of Turku

Co-authored papers 1

Tomislav ??muc

Ruder Boskovic Institute

Co-authored papers 1

Giuseppe Profiti

University of Bologna

Co-authored papers 1

1 - 30

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