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Author Details

Karen W Davenport
Los Alamos National Laboratory
2010
142
28
PMIDPaper TitleJournal TitlePublished Year
36208288A contiguous de novo genome assembly of sugar beet EL10 (Beta vulgaris L.).DNA Res2023
37069400Cohort-based learning for microbiome research community standards.Nat Microbiol2023
35924938Complete Genome Sequences of the Soil Oxalotrophic Bacterium Cupriavidus oxalaticus Strain Ox1 and Its Derived mCherry-Tagged Strain.Microbiol Resour Announc2022
35561186EDGE COVID-19: a web platform to generate submission-ready genomes from SARS-CoV-2 sequencing efforts.Bioinformatics2022
36962439Comparing variability in diagnosis of upper respiratory tract infections in patients using syndromic, next generation sequencing, and PCR-based methods.PLOS Glob Public Health2022
36303775Challenges in Bioinformatics Workflows for Processing Microbiome Omics Data at Scale.Front Bioinform2022
32777813A public website for the automated assessment and validation of SARS-CoV-2 diagnostic PCR assays.Bioinformatics2021
33524010Comparative genomic and phenotypic characterization of invasive non-typhoidal Salmonella isolates from Siaya, Kenya.PLoS Negl Trop Dis2021
34851164Discovery of an Antarctic Ascidian-Associated Uncultivated <i>Verrucomicrobia</i> with Antimelanoma Palmerolide Biosynthetic Potential.mSphere2021
35004620Bioinformatic and Mechanistic Analysis of the Palmerolide PKS-NRPS Biosynthetic Pathway From the Microbiome of an Antarctic Ascidian.Front Chem2021
34621007Widespread bacterial diversity within the bacteriome of fungi.Commun Biol2021
33440006Democratization of fungal highway columns as a tool to investigate bacteria associated with soil fungi.FEMS Microbiol Ecol2021
32350400The National Microbiome Data Collaborative: enabling microbiome science.Nat Rev Microbiol2020
32015354Standardized phylogenetic and molecular evolutionary analysis applied to species across the microbial tree of life.Sci Rep2020
32498449Uncovering the Core Microbiome and Distribution of Palmerolide in <i>Synoicum adareanum</i> Across the Anvers Island Archipelago<i>,</i> Antarctica.Mar Drugs2020
30478230Remedial Treatment of Corroded Iron Objects by Environmental <i>Aeromonas</i> Isolates.Appl Environ Microbiol2019
31672738Nuclear Genome Assembly of the Microalga Nannochloropsis salina CCMP1776.Microbiol Resour Announc2019
31792246Microbial Diversity in Bushmeat Samples Recovered from the Serengeti Ecosystem in Tanzania.Sci Rep2019
31519979In-Vivo Retention of 5-Fluorouracil Using <sup>19</sup>F Magnetic Resonance Chemical Shift Imaging in Colorectal Cancer in a Murine Model.Sci Rep2019
31488526Complete Genome Sequence of a Parabacteroides distasonis Strain (CavFT hAR46) Isolated from a Gut Wall-Cavitating Microlesion in a Patient with Severe Crohn's Disease.Microbiol Resour Announc2019
30975813Draft Genome Sequences of Two Staphylococcus warneri Clinical Isolates, Strains SMA0023-04 (UGA3) and SMA0670-05 (UGA28), from Siaya County Referral Hospital, Siaya, Kenya.Microbiol Resour Announc2019
31000562Genome Sequence of a Staphylococcus xylosus Clinical Isolate, Strain SMA0341-04 (UGA5), from Siaya County Referral Hospital in Siaya, Kenya.Microbiol Resour Announc2019
31023806Genome Sequences of a Staphylococcus aureus Clinical Isolate, Strain SMA0034-04 (UGA22), from Siaya County Referral Hospital in Siaya, Kenya.Microbiol Resour Announc2019
31023805Genome Sequence of Staphylococcus pettenkoferi Strain SMA0010-04 (UGA20), a Clinical Isolate from Siaya County Referral Hospital in Siaya, Kenya.Microbiol Resour Announc2019
29348328Correction for Johnson et al., "Complete Genome Sequences for 35 Biothreat Assay-Relevant <i>Bacillus</i> Species".Genome Announc2018
30533668Complete Genome Sequences of Historic Clostridioides difficile Food-Dwelling Ribotype 078 Strains in Canada Identical to That of the Historic Human Clinical Strain M120 in the United Kingdom.Microbiol Resour Announc2018
27899609Enabling the democratization of the genomics revolution with a fully integrated web-based bioinformatics platform.Nucleic Acids Res2017
34595290Brief Protocol for EDGE Bioinformatics: Analyzing Microbial and Metagenomic NGS Data.Bio Protoc2017
28126937Draft Genome Sequence of Sorghum Grain Mold Fungus Epicoccum sorghinum, a Producer of Tenuazonic Acid.Genome Announc2017
28473393High-Quality Draft Genome Sequences of Four Lignocellulose-Degrading Bacteria Isolated from Puerto Rican Forest Soil: <i>Gordonia</i> sp., <i>Paenibacillus</i> sp., <i>Variovorax</i> sp., and <i>Vogesella</i> sp.Genome Announc2017
28951866Exception to the Rule: Genomic Characterization of Naturally Occurring Unusual <i>Vibrio cholerae</i> Strains with a Single Chromosome.Int J Genomics2017
28775794High-quality genome sequence of the radioresistant bacterium <i>Deinococcus ficus</i> KS 0460.Stand Genomic Sci2017
28798164Draft Nuclear Genome, Complete Chloroplast Genome, and Complete Mitochondrial Genome for the Biofuel/Bioproduct Feedstock Species <i>Scenedesmus obliquus</i> Strain DOE0152z.Genome Announc2017
27103731Correction for Johnson et al., Complete Genome Sequences for 59 Burkholderia Isolates, Both Pathogenic and Near Neighbor.Genome Announc2016
27811091Genome Sequences of Eight Bacterial Species Found in Coculture with the Haptophyte Chrysochromulina tobin.Genome Announc2016
27365360Genome Sequence of the Historical Clinical Isolate Burkholderia pseudomallei PHLS 6.Genome Announc2016
27289094Whole-Genome Comparative Analysis of Two Carbapenem-Resistant ST-258 Klebsiella pneumoniae Strains Isolated during a North-Eastern Ohio Outbreak: Differences within the High Heterogeneity Zones.Genome Biol Evol2016
27274784Complete genome sequence of the haloalkaliphilic, obligately chemolithoautotrophic thiosulfate and sulfide-oxidizing γ-proteobacterium Thioalkalimicrobium cyclicum type strain ALM 1 (DSM 14477(T)).Stand Genomic Sci2016
26744368Draft Genomes for Eight Burkholderia mallei Isolates from Turkey.Genome Announc2016
24589017The genome of Syntrophorhabdus aromaticivorans strain UI provides new insights for syntrophic aromatic compound metabolism and electron flow.Environ Microbiol2015
26383665Finished Genome Assembly of Warm Spring Isolate Francisella novicida DPG 3A-IS.Genome Announc2015
26383663Genome Assemblies for 11 Yersinia pestis Strains Isolated in the Caucasus Region.Genome Announc2015
26383662Finished Genome Assembly of Yersinia pestis EV76D and KIM 10v.Genome Announc2015
26594307Genome sequence and description of the anaerobic lignin-degrading bacterium Tolumonas lignolytica sp. nov.Stand Genomic Sci2015
25931592Complete genome sequences for 59 burkholderia isolates, both pathogenic and near neighbor.Genome Announc2015
25931591Complete genome sequences for 35 biothreat assay-relevant bacillus species.Genome Announc2015
25931590Thirty-Two Complete Genome Assemblies of Nine Yersinia Species, Including Y. pestis, Y. pseudotuberculosis, and Y. enterocolitica.Genome Announc2015
25931589Genome sequencing of 18 francisella strains to aid in assay development and testing.Genome Announc2015
25977434Complete Genome Assemblies for Two Single-Chromosome Vibrio cholerae Isolates, Strains 1154-74 (Serogroup O49) and 10432-62 (Serogroup O27).Genome Announc2015
25676747Whole-Genome Sequences of 80 Environmental and Clinical Isolates of Burkholderia pseudomallei.Genome Announc2015
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Collaborators

Los Alamos National Laboratory
Co-authored papers 93
Co-authored papers 47
Los Alamos National Laboratory
Co-authored papers 38
Co-authored papers 36
Los Alamos National Laboratory
Co-authored papers 32
Los Alamos National Laboratory
Co-authored papers 29
Oak Ridge National Laboratory
Co-authored papers 23
Department of Energy (DOE) Joint Genome Institute
Co-authored papers 20
Celgene Corporation
Co-authored papers 19
Los Alamos National Laboratory
Co-authored papers 17
Co-authored papers 17
Center for Algorithmic Biotechnology, Saint Petersburg State University
Co-authored papers 14
DOE Joint Genome Institute, Lawrence Berkeley National Laboratory
Co-authored papers 13
Co-authored papers 9
Cleveland Clinic Akron General Medical Center
Co-authored papers 9
Los Alamos National Laboratory
Co-authored papers 7
McLean Hospital
Co-authored papers 5
Los Alamos National Laboratory
Co-authored papers 5
Co-authored papers 5
Co-authored papers 5
Co-authored papers 5
University of Massachusetts
Co-authored papers 4
Joint BioEnergy Institute, USA Lawrence Berkeley National Laboratory
Co-authored papers 4
University of Chicago
Co-authored papers 4
University of Tennessee
Co-authored papers 4
DOE Joint Genome Institute, Lawrence Berkeley National Laboratory
Co-authored papers 3
Oak Ridge National Laboratory
Co-authored papers 3
University of Wisconsin - Madison
Co-authored papers 3
Institute of Biology, University of Neuchatel
Co-authored papers 3
Lawrence Berkeley National Laboratory
Co-authored papers 2