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Author Details

Neil D Rawlings
1983
81
45
PMIDPaper TitleJournal TitlePublished Year
32920969How to use the MEROPS database and website to help understand peptidase specificity.Protein Sci2021
31838087Twenty-five years of nomenclature and classification of proteolytic enzymes.Biochimica et Biophysica Acta - Proteins and Proteomics2020
31377195Origins of peptidases.Biochimie2019
30398656InterPro in 2019: improving coverage, classification and access to protein sequence annotations.Nucleic Acids Res2019
30184176Twenty years of bioinformatics research for protease-specific substrate and cleavage site prediction: a comprehensive revisit and benchmarking of existing methods.Brief Bioinform2019
29897410iProt-Sub: a comprehensive package for accurately mapping and predicting protease-specific substrates and cleavage sites.Brief Bioinform2019
30364992Genome properties in 2019: a new companion database to InterPro for the inference of complete functional attributes.Nucleic Acids Res2019
29145643The MEROPS database of proteolytic enzymes, their substrates and inhibitors in 2017 and a comparison with peptidases in the PANTHER database.Nucleic Acids Res2018
27899635InterPro in 2017-beyond protein family and domain annotations.Nucleic Acids Res2017
28456986Using the MEROPS Database for Investigation of Lysosomal Peptidases, Their Inhibitors, and Substrates.Methods in Molecular Biology2017
26527717Twenty years of the MEROPS database of proteolytic enzymes, their substrates and inhibitors.Nucleic Acids Res2016
26455268Peptidase specificity from the substrate cleavage collection in the MEROPS database and a tool to measure cleavage site conservation.2016
26527411Bacterial calpains and the evolution of the calpain (C2) family of peptidases.Biology Direct2015
25820941Key challenges for the creation and maintenance of specialist protein resources.Proteins2015
26175406Chromerid genomes reveal the evolutionary path from photosynthetic algae to obligate intracellular parasites.Elife2015
26284514Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat.Database (Oxford)2015
24646163Structure and computational analysis of a novel protein with metallopeptidase-like and circularly permuted winged-helix-turn-helix domains reveals a possible role in modified polysaccharide biosynthesis.BMC Bioinformatics2014
25501939Using the MEROPS Database for Proteolytic Enzymes and Their Inhibitors and Substrates.Curr Protoc Bioinformatics2014
24157837MEROPS: the database of proteolytic enzymes, their substrates and inhibitors.Nucleic Acids Res2014
24383880New mini- zincin structures provide a minimal scaffold for members of this metallopeptidase superfamily.BMC Bioinformatics2014
24134311A novel RCE1 isoform is required for H-Ras plasma membrane localization and is regulated by USP17.Biochemical Journal2014
25015382Genomic analysis of the causative agents of coccidiosis in domestic chickens.Genome Res2014
23584835Identification and prioritization of novel uncharacterized peptidases for biochemical characterization.Database : the journal of biological databases and curation2013
24312173Evolution of the thermopsin peptidase family (A5).PLoS ONE2013
24274019LUD, a new protein domain associated with lactate utilization.BMC Bioinformatics2013
22086950MEROPS: the database of proteolytic enzymes, their substrates and inhibitors.Nucleic Acids Res2012
21832066Asparagine peptide lyases: a seventh catalytic type of proteolytic enzymes.J Biol Chem2011
21799766Structural analysis of papain-like NlpC/P60 superfamily enzymes with a circularly permuted topology reveals potential lipid binding sites.PLoS One2011
21799754Structural and sequence analysis of imelysin-like proteins implicated in bacterial iron uptake.PLoS One2011
20558234Prokaryote-derived protein inhibitors of peptidases: A sketchy occurrence and mostly unknown function.2010
19892822MEROPS: the peptidase database.Nucleic Acids Res2010
20430064Peptidase inhibitors in the MEROPS database.2010
20157488A large and accurate collection of peptidase cleavages in the MEROPS database.Database : the journal of biological databases and curation2009
19758436Pepsin homologues in bacteria.BMC Genomics2009
17980477The MEROPS batch BLAST: a tool to detect peptidases and their non-peptidase homologues in a genome.Biochimie2008
17991683MEROPS: the peptidase database.Nucleic Acids Research2008
17976007'Species' of peptidases.Biological Chemistry2007
17173540Unusual phyletic distribution of peptidases as a tool for identifying potential drug targets.Biochemical Journal2007
17267443Fxna, a novel gene differentially expressed in the rat ovary at the time of folliculogenesis, is required for normal ovarian histogenesis.Development (Cambridge)2007
16381862MEROPS: the peptidase database.Nucleic Acids Research2006
15994557Genome of the host-cell transforming parasite Theileria annulata compared with T. parva.Science2005
15124630The PepSY domain: a regulator of peptidase activity in the microbial environment?Trends Biochem Sci2004
14681384MEROPS: the peptidase database.Nucleic Acids Research2004
14705960Evolutionary families of peptidase inhibitors.Biochemical Journal2004
12765834The CHAP domain: a large family of amidases including GSP amidase and peptidoglycan hydrolases.Trends Biochem Sci2003
12740029A comparison of Pfam and MEROPS: two databases, one comprehensive, and one specialised.BMC Bioinformatics2003
12887054Managing peptidases in the genomic era.Biological Chemistry2003
11752332MEROPS: the protease database.Nucleic Acids Research2002
11551172The MEROPS database as a protease information system.Journal of Structural Biology2001
11517925Evolutionary lines of cysteine peptidases.Biological Chemistry2001
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J. Craig Venter Institute
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University of Southern California
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carnegie mellon university
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carnegie mellon university
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Merck & Co., Inc.
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University of California Riverside School of Medicine
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National Center for Biotechnology Information, National Institutes of Health
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Rice University
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Monash Data Futures Institute, Monash University
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