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Author Details

Marek S Skrzypek
Stanford University
1983
57
30
PMIDPaper TitleJournal TitlePublished Year
36866529The Gene Ontology knowledgebase in 2023.Genetics2023
36607068Saccharomyces genome database update: server architecture, pan-genome nomenclature, and external resources.Genetics2023
34897464New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources.Genetics2022
36008656How to Use the Candida Genome Database.Methods Mol Biol2022
31612944Transcriptome visualization and data availability at the Saccharomyces Genome Database.Nucleic Acids Res2020
29140510Saccharomyces genome database informs human biology.Nucleic Acids Res2018
29688362Updated regulation curation model at the Saccharomyces Genome Database.Database (Oxford)2018
29761455Using the Candida Genome Database.Methods Mol Biol2018
27738138The Candida Genome Database (CGD): incorporation of Assembly 22, systematic identifiers and visualization of high throughput sequencing data.Nucleic Acids Res2017
28365719Outreach and online training services at the Saccharomyces Genome Database.Database (Oxford)2017
27252399Integration of new alternative reference strain genome sequences into the Saccharomyces genome database.Database (Oxford)2016
26519061How to Use the Candida Genome Database.Methods Mol Biol2016
26578556The Saccharomyces Genome Database Variant Viewer.Nucleic Acids Res2016
25313161The complex portal--an encyclopaedia of macromolecular complexes.Nucleic Acids Res2015
25997651Biocuration at the Saccharomyces genome database.Genesis2015
24194595The Aspergillus Genome Database: multispecies curation and incorporation of RNA-Seq data to improve structural gene annotations.Nucleic Acids Res2014
24813190Literature-based gene curation and proposed genetic nomenclature for cryptococcus.Eukaryot Cell2014
24923819Curation accuracy of model organism databases.Database (Oxford)2014
24374639The reference genome sequence of Saccharomyces cerevisiae: then and now.G3 (Bethesda)2014
24185697The Candida Genome Database: the new homology information page highlights protein similarity and phylogeny.Nucleic Acids Res2014
23143685Improved gene ontology annotation for biofilm formation, filamentous growth, and phenotypic switching in Candida albicans.Eukaryot Cell2013
23617571Comprehensive annotation of secondary metabolite biosynthetic genes and gene clusters of Aspergillus nidulans, A. fumigatus, A. niger and A. oryzae.BMC Microbiol2013
23161678Gene Ontology annotations and resources.Nucleic Acids Res2013
22110037Saccharomyces Genome Database: the genomics resource of budding yeast.Nucleic Acids Res2012
22080559The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources.Nucleic Acids Res2012
22064862The Candida genome database incorporates multiple Candida species: multispecies search and analysis tools with curated gene and protein information for Candida albicans and Candida glabrata.Nucleic Acids Res2012
21595960Toward an interactive article: integrating journals and biological databases.BMC Bioinformatics2011
21901739Using the Saccharomyces Genome Database (SGD) for analysis of genomic information.Curr Protoc Bioinformatics2011
19773420The Aspergillus Genome Database, a curated comparative genomics resource for gene, protein and sequence information for the Aspergillus research community.Nucleic Acids Res2010
19906697Saccharomyces Genome Database provides mutant phenotype data.Nucleic Acids Res2010
19808938New tools at the Candida Genome Database: biochemical pathways and full-text literature search.Nucleic Acids Res2010
19465905Evolution of pathogenicity and sexual reproduction in eight Candida genomes.Nature2009
20157474New mutant phenotype data curation system in the Saccharomyces Genome Database.Database (Oxford)2009
19577928Gene Ontology and the annotation of pathogen genomes: the case of Candida albicans.Trends Microbiol2009
17982175Gene Ontology annotations at SGD: new data sources and annotation methods.Nucleic Acids Res2008
17142221Expanded protein information at SGD: new pages and proteome browser.Nucleic Acids Res2007
17090582Sequence resources at the Candida Genome Database.Nucleic Acids Res2007
16381907Genome Snapshot: a new resource at the Saccharomyces Genome Database (SGD) presenting an overview of the Saccharomyces cerevisiae genome.Nucleic Acids Res2006
16879419The Candida Genome Database: facilitating research on Candida albicans molecular biology.FEMS Yeast Res2006
15608216The Candida Genome Database (CGD), a community resource for Candida albicans gene and protein information.Nucleic Acids Res2005
16268783Analysis of gene ontology features in microarray data using the Proteome BioKnowledge Library.In Silico Biol2005
15608219Fungal BLAST and Model Organism BLASTP Best Hits: new comparison resources at the Saccharomyces Genome Database (SGD).Nucleic Acids Res2005
12073323Three yeast proteome databases: YPD, PombePD, and CalPD (MycoPathPD).Methods Enzymol2002
11967828Mutant analysis reveals complex regulation of sphingolipid long chain base phosphates and long chain bases during heat stress in yeast.Yeast2002
11125054YPD, PombePD and WormPD: model organism volumes of the BioKnowledge library, an integrated resource for protein information.Nucleic Acids Res2001
11795842Elevation of endogenous sphingolipid long-chain base phosphates kills Saccharomyces cerevisiae cells.Curr Genet2001
11126778Dominant suppressor mutation bypasses the sphingolipid requirement for growth of Saccharomyces cells at low pH: role of the CWP2 gene.Curr Genet2000
9973338Analysis of phosphorylated sphingolipid long-chain bases reveals potential roles in heat stress and growth control in Saccharomyces.J Bacteriol1999
9677363The LCB4 (YOR171c) and LCB5 (YLR260w) genes of Saccharomyces encode sphingoid long chain base kinases.J Biol Chem1998
9446592Inhibition of amino acid transport by sphingoid long chain bases in Saccharomyces cerevisiae.J Biol Chem1998
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Collaborators

Stanford University
Co-authored papers 23
Stanford University
Co-authored papers 22
The Broad Institute of Harvard and MIT
Co-authored papers 21
Stanford University
Co-authored papers 19
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Co-authored papers 18
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Co-authored papers 17
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Co-authored papers 16
Stanford University
Co-authored papers 16
Stanford University
Co-authored papers 11
Genentech Inc.
Co-authored papers 10
Stanford University School of Medicine
Co-authored papers 9
Stanford University School of Medicine
Co-authored papers 9
Broad Institute of MIT and Harvard
Co-authored papers 9
Stanford Medicine Clinical Genomics Program
Co-authored papers 8
Stanford University School of Medicine
Co-authored papers 8
Stanford University Medical School
Co-authored papers 7
Stanford University
Co-authored papers 6
Lewis-Sigler Institute for Integrative Genomics, Princeton University
Co-authored papers 5
Lewis-Sigler Institute for Integrative Genomics, Princeton University
Co-authored papers 5
Calico Life Sciences LLC
Co-authored papers 5
Broad Institute of MIT and Harvard
Co-authored papers 4
California Institute of Technology
Co-authored papers 3
Stanford University School of Medicine, Center for Clinical Sciences Research
Co-authored papers 3
The Australian National University
Co-authored papers 3
Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 3
California Institute of Technology
Co-authored papers 3
Lewis-Sigler Institute for Integrative Genomics, Princeton University
Co-authored papers 3
Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 3
Stanford University School of Medicine
Co-authored papers 3
Center for Genetic Medicine, Northwestern University.
Co-authored papers 2