Skip to Main Content

Author Details

Brian L Frey
University of Wisconsin-Madison, 1101 University Ave
2000
46
23
Leah V Schaffer (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37093976Elucidating the RNA-Protein Interactomes of Target RNAs in Tissue.Anal Chem2023
37791746Cysteine Counting via Isotopic Chemical Labeling for Intact Mass Proteoform Identifications in Tissue.Anal Chem2023
37130807Newly synthesized glycoprotein profiling to identify molecular signatures of warm ischemic injury in donor lungs.Am J Physiol Lung Cell Mol Physiol2023
35073098MetaNetwork Enhances Biological Insights from Quantitative Proteomics Differences by Combining Clustering and Enrichment Analyses.J Proteome Res2022
35192358Discovery of Dehydroamino Acid Residues in the Capsid and Matrix Structural Proteins of HIV-1.J Proteome Res2022
32967423Spritz: A Proteogenomic Database Engine.J Proteome Res2021
33683901Binary Classifier for Computing Posterior Error Probabilities in MetaMorpheus.J Proteome Res2021
34836951An atlas of protein turnover rates in mouse tissues.Nat Commun2021
30346791Global Identification of Post-Translationally Spliced Peptides with Neo-Fusion.J Proteome Res2019
31479276Constructing Human Proteoform Families Using Intact-Mass and Top-Down Proteomics with a Multi-Protease Global Post-Translational Modification Discovery Database.J Proteome Res2019
31086819Differentiated fibrocytes assume a functional mesenchymal phenotype with regenerative potential.Sci Adv2019
29195273Proteoform Suite: Software for Constructing, Quantifying, and Visualizing Proteoform Families.J Proteome Res2018
30180576Identification and Quantification of Murine Mitochondrial Proteoforms Using an Integrated Top-Down and Intact-Mass Strategy.J Proteome Res2018
29578715Enhanced Global Post-translational Modification Discovery with MetaMorpheus.J Proteome Res2018
29723810Long Noncoding RNAs AC009014.3 and Newly Discovered XPLAID Differentiate Aggressive and Indolent Prostate Cancers.Transl Oncol2018
29227670Expanding Proteoform Identifications in Top-Down Proteomic Analyses by Constructing Proteoform Families.Anal Chem2018
28608680Correction to "Elucidating Proteoform Families from Proteoform Intact-Mass and Lysine-Count Measurements".J Proteome Res2017
28248113Global Post-Translational Modification Discovery.J Proteome Res2017
28968100Elucidating Escherichia coli Proteoform Families Using Intact-Mass Proteomics and a Global PTM Discovery Database.J Proteome Res2017
28662401Fibrillin-2 and Tenascin-C bridge the age gap in lung epithelial regeneration.Biomaterials2017
26724458Protein turnover during in vitro tissue engineering.Biomaterials2016
26476196Proteomic analysis of naturally-sourced biological scaffolds.Biomaterials2016
26941048Elucidating Proteoform Families from Proteoform Intact-Mass and Lysine-Count Measurements.J Proteome Res2016
26704769Human Proteomic Variation Revealed by Combining RNA-Seq Proteogenomics and Global Post-Translational Modification (G-PTM) Search Strategy.J Proteome Res2016
26418581Global Identification of Protein Post-translational Modifications in a Single-Pass Database Search.J Proteome Res2015
26354429Formaldehyde crosslinking: a tool for the study of chromatin complexes.J Biol Chem2015
26582902Bioengineered vocal fold mucosa for voice restoration.Sci Transl Med2015
24175627Large-scale mass spectrometric detection of variant peptides resulting from nonsynonymous nucleotide differences.J Proteome Res2014
24999558Discovery of Chromatin-Associated Proteins via Sequence-Specific Capture and Mass Spectrometric Protein Identification in Saccharomyces cerevisiae.J Proteome Res2014
25149441Using Galaxy-P to leverage RNA-Seq for the discovery of novel protein variations.BMC Genomics2014
24486316Methylation of yeast ribosomal protein S2 is elevated during stationary phase growth conditions.Biochem Biophys Res Commun2014
23102991Proteomic analysis of a decellularized human vocal fold mucosa scaffold using 2D electrophoresis and high-resolution mass spectrometry.Biomaterials2013
23918461Chemical derivatization of peptide carboxyl groups for highly efficient electron transfer dissociation.J Am Soc Mass Spectrom2013
23629695Discovery and mass spectrometric analysis of novel splice-junction peptides using RNA-Seq.Mol Cell Proteomics2013
21604117Complete chemical modification of amine and acid functional groups of peptides and small proteins.Methods Mol Biol2011
22028835Sequence-specific capture of protein-DNA complexes for mass spectrometric protein identification.PLoS One2011
21524146Discovery of neuropeptides in the nematode Ascaris suum by database mining and tandem mass spectrometry.J Proteome Res2011
21114270Alkylating tryptic peptides to enhance electrospray ionization mass spectrometry analysis.Anal Chem2010
19481956Modifying the charge state distribution of proteins in electrospray ionization mass spectrometry by chemical derivatization.J Am Soc Mass Spectrom2009
19802328Ion-Ion Reactions with Fixed-Charge Modified Proteins to Produce Ions in a Single, Very High Charge State.Int J Mass Spectrom2008
17563114Relative quantification of carboxylic acid metabolites by liquid chromatography-mass spectrometry using isotopic variants of cholamine.Anal Chem2007
16970314Ionizable isotopic labeling reagent for relative quantification of amine metabolites by mass spectrometry.Anal Chem2006
15741243Alpha-Ketoisocaproate-induced hypersecretion of insulin by islets from diabetes-susceptible mice.Am J Physiol Endocrinol Metab2005
16198118Controlling gas-phase reactions for efficient charge reduction electrospray mass spectrometry of intact proteins.J Am Soc Mass Spectrom2005
11924978In situ FT-IR measurements of competitive vapor adsorption into porous thin films containing silica nanoparticles.Anal Chem2002
10814434Aberrant S(RN)1 Reaction of 4-Aminophenol with alpha,p-Dinitrocumene: EPR Observation of Intermediates.Org Lett2000
  • 1 - 46 of 46

Recommended Authors

Alicia L Richards
University of Wisconsin-Madison
Career Start Year 2011
Number of shared co-authors 2
John Klimek
Oregon Health & Science University
Career Start Year 2008
Number of shared co-authors 0
Michael R Hoopmann
Institute for Systems Biology
Career Start Year 2007
Number of shared co-authors 1
Athena A Schepmoes
Pacific Northwest National Laboratory
Career Start Year 2006
Number of shared co-authors 0
Wendy Sandoval
Genentech Inc.
Career Start Year 2006
Number of shared co-authors 3
Therese R W Clauss
Pacific Northwest National Laboratory
Career Start Year 2005
Number of shared co-authors 0
Matthew E Monroe
Pacific Northwest National Laboratory
Career Start Year 2004
Number of shared co-authors 0
Paul M Thomas
Northwestern University
Career Start Year 2003
Number of shared co-authors 6
Hanno Steen
Boston Children's Hospital, USA Harvard Medical School, Harvard Medical School
Career Start Year 2000
Number of shared co-authors 0
Marina A Gritsenko
Pacific Northwest National Laboratory
Career Start Year 2000
Number of shared co-authors 0
Robert J Chalkley
Department of Pharmaceutical Chemistry, University of California at San Francisco
Career Start Year 1999
Number of shared co-authors 0
Neil L Kelleher
Northwestern University
Career Start Year 1995
Number of shared co-authors 7
Michael J MacCoss
University of Washington
Career Start Year 1995
Number of shared co-authors 1
Si Wu
The Fourth Hospital of Hebei Medical University
Career Start Year 1995
Number of shared co-authors 4
Ljiljana Pa??a-Toli??
Pacific Northwest National Laboratory
Career Start Year 1994
Number of shared co-authors 6
Christoph H Borchers
McGill University
Career Start Year 1994
Number of shared co-authors 0
Jimmy K Eng
University of Washington
Career Start Year 1994
Number of shared co-authors 1
Rachel R Ogorzalek Loo
university of california los angeles
Career Start Year 1991
Number of shared co-authors 1
Ole N Jensen
VILLUM Center for Bioanalytical Sciences, University of Southern Denmark
Career Start Year 1991
Number of shared co-authors 1
Albert J R Heck
Utrecht University
Career Start Year 1991
Number of shared co-authors 0
Matthias Mann
Max-Planck Institute of Biochemistry
Career Start Year 1989
Number of shared co-authors 0
David R Goodlett
University of Victoria
Career Start Year 1988
Number of shared co-authors 4
Birgit Schilling
Buck Institute for Research on Aging
Career Start Year 1985
Number of shared co-authors 0
Martin A Moseley
Center for Genomic and Computational Biology
Career Start Year 1985
Number of shared co-authors 0
Robert L Moritz
Institute for Systems Biology
Career Start Year 1985
Number of shared co-authors 0
Brian T Chait
The Rockefeller University
Career Start Year 1984
Number of shared co-authors 0
Ruedi Aebersold
Institute of Molecular Systems Biology, ETH Zurich
Career Start Year 1982
Number of shared co-authors 2
Steven A Carr
Broad Institute of MIT and Harvard
Career Start Year 1980
Number of shared co-authors 2
Richard D Smith
Pacific Northwest National Laboratory
Career Start Year 1964
Number of shared co-authors 0
Alma L Burlingame
Department of Pharmaceutical Chemistry, University of California san francisco
Career Start Year 1964
Number of shared co-authors 0

Collaborators

Lloyd M Smith
University of Wisconsin-Madison College of Letters and Sciences
Co-authored papers 42
Michael R Shortreed
University of Wisconsin-Madison
Co-authored papers 25
Mark Scalf
University of Wisconsin-Madison College of Letters and Sciences
Co-authored papers 16
Anthony J Cesnik
University of Wisconsin-Madison
Co-authored papers 10
Leah V Schaffer (CM4AI)
University of California San Diego
Co-authored papers 7
Qiyao Li
The Second Hospital of Hebei Medical University
Co-authored papers 5
Zach Rolfs
University of Wisconsin-Madison
Co-authored papers 5
Stefan K Solntsev
University of Wisconsin-Madison
Co-authored papers 5
Gloria M Sheynkman (CM4AI)
University of Virginia
Co-authored papers 5
Rachel A Knoener
University of Wisconsin-Madison College of Letters and Sciences
Co-authored papers 4
Yunxiang Dai
University of Wisconsin-Madison
Co-authored papers 3
Robert J Millikin
Morgridge Institute for Research
Co-authored papers 3
Michael Olivier
Co-authored papers 2
Craig D Wenger
University of Wisconsin
Co-authored papers 2
Audrey P Gasch
University of Wisconsin-Madison
Co-authored papers 2
Lei Liu
University of Wisconsin-Madison
Co-authored papers 1
Timothy J Griffin
University of Minnesota
Co-authored papers 1
Charles R Evans
Co-authored papers 1
Pratik D Jagtap
University of Minnesota
Co-authored papers 1
Katherine E Buxton
University of Wisconsin , 1101 University Avenue
Co-authored papers 1
Getiria Onsongo
Macalester College
Co-authored papers 1
David T Auble
University of Virginia
Co-authored papers 1
Christina Kendziorski
University of Wisconsin-Madison
Co-authored papers 1
Jarred W Rensvold
Washington University School of Medicine
Co-authored papers 1
Rachel M Miller
University of Wisconsin-Madison
Co-authored papers 1
Adam Jochem
Morgridge Institute for Research
Co-authored papers 1
Rachel M Miller
University of Wisconsin , 1101 University Avenue
Co-authored papers 1
David J Pagliarini
Washington University School of Medicine
Co-authored papers 1
Release 1.2