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Author Details

Rosa Viner
University of California (Davis)
1984
72
32
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36926872Real-Time Library Search Increases Cross-Link Identification Depth across All Levels of Sample Complexity.Anal Chem2023
37278738Added Value of Internal Fragments for Top-Down Mass Spectrometry of Intact Monoclonal Antibodies and Antibody-Drug Conjugates.Anal Chem2023
37273903Production and characterization of an AAV1-VP3-only capsid: An analytical benchmark standard.Mol Ther Methods Clin Dev2023
37398332Mapping the architecture of the initiating phosphoglycosyl transferase from <i>S. enterica</i> O-antigen biosynthesis in a liponanoparticle.bioRxiv2023
34927332A Membrane-Permeable and Immobilized Metal Affinity Chromatography (IMAC) Enrichable Cross-Linking Reagent to Advance Inâ¿¿Vivo Cross-Linking Mass Spectrometry.Angew Chem Int Ed Engl2022
35363494Retention Time Prediction for TMT-Labeled Peptides in Proteomic LC-MS Experiments.J Proteome Res2022
35290030Optimized TMT-Based Quantitative Cross-Linking Mass Spectrometry Strategy for Large-Scale Interactomic Studies.Anal Chem2022
34133129Evaluation and Optimization of High-Field Asymmetric Waveform Ion-Mobility Spectrometry for Multiplexed Quantitative Site-Specific N-Glycoproteomics.Anal Chem2021
33592142Improving Spectral Validation Rates in Hydrogen-Deuterium Exchange Data Analysis.Anal Chem2021
33898396Proteomic Profiling of IgG1 Producing CHO Cells Using LC/LC-SPS-MS<sup>3</sup>: The Effects of Bioprocessing Conditions on Productivity and Product Quality.Front Bioeng Biotechnol2021
32371966Combining native and 'omics' mass spectrometry to identify endogenous ligands bound to membrane proteins.Nat Methods2020
31986272A streamlined workflow for twoplexing of N-linked glycan analysis using light (<sup>12</sup>C<sub>6</sub>) and heavy (<sup>13</sup>C<sub>6</sub>) isotopologues of 3-aminobenzenesulfonic acid.Anal Chim Acta2020
33065067Toward Increased Reliability, Transparency, and Accessibility in Cross-linking Mass Spectrometry.Structure2020
32643919Expanding the Depth and Sensitivity of Cross-Link Identification by Differential Ion Mobility Using High-Field Asymmetric Waveform Ion Mobility Spectrometry.Anal Chem2020
32203386TMTpro reagents: a set of isobaric labeling mass tags enables simultaneous proteome-wide measurements across 16 samples.Nat Methods2020
30501201TomahaqCompanion: A Tool for the Creation and Analysis of Isobaric Label Based Multiplexed Targeted Assays.J Proteome Res2019
31315432Glycoproteomic Analysis of the Aortic Extracellular Matrix in Marfan Patients.Arterioscler Thromb Vasc Biol2019
31274290Correction to Direct Mass Spectrometry Analysis of Protein Complexes and Intact Proteins up to &gt;70 kDa from Tissue.Anal Chem2019
31045356First Community-Wide, Comparative Cross-Linking Mass Spectrometry Study.Anal Chem2019
31062957Direct Mass Spectrometry Analysis of Protein Complexes and Intact Proteins up to &gt;70 kDa from Tissue.Anal Chem2019
30723094Probing H<sub>2</sub>O<sub>2</sub>-mediated Structural Dynamics of the Human 26S Proteasome Using Quantitative Cross-linking Mass Spectrometry (QXL-MS).Mol Cell Proteomics2019
30351145Evaluation of Advanced Precursor Determination for Tandem Mass Tag (TMT)-Based Quantitative Proteomics across Instrument Platforms.J Proteome Res2019
30692685An allosteric MALT1 inhibitor is a molecular corrector rescuing function in an immunodeficient patient.Nat Chem Biol2019
29336549Top-Down Hydrogen-Deuterium Exchange Analysis of Protein Structures Using Ultraviolet Photodissociation.Anal Chem2018
30111733Proteome-Wide Analysis of Trypanosoma cruzi Exponential and Stationary Growth Phases Reveals a Subcellular Compartment-Specific Regulation.Genes (Basel)2018
30348809A Novel Germline Variant in CSF3R Reduces N-Glycosylation and Exerts Potent Oncogenic Effects in Leukemia.Cancer Res2018
28385662High resolution top-down experimental strategies on the Orbitrap platform.J Proteomics2018
29451981High Performance Anion Exchange and Hydrophilic Interaction Liquid Chromatography Approaches for Comprehensive Mass Spectrometry-Based Characterization of the N-Glycome of a Recombinant Human Erythropoietin.J Proteome Res2018
27318177Comprehensive glycoprofiling of the epimastigote and trypomastigote stages of Trypanosoma cruzi.J Proteomics2017
28280844In-depth analyses of native N-linked glycans facilitated by high-performance anion exchange chromatography-pulsed amperometric detection coupled to mass spectrometry.Anal Bioanal Chem2017
29022350Sensitive and Accurate Quantitation of Phosphopeptides Using TMT Isobaric Labeling Technique.J Proteome Res2017
28875426Analysis of Proteins, Protein Complexes, and Organellar Proteomes Using Sheathless Capillary Zone Electrophoresis - Native Mass Spectrometry.J Am Soc Mass Spectrom2017
28821611The proteasome-interacting Ecm29 protein disassembles the 26S proteasome in response to oxidative stress.J Biol Chem2017
28524877Optimized fragmentation schemes and data analysis strategies for proteome-wide cross-link identification.Nat Commun2017
28790197Breast tumors educate the proteome of stromal tissue in an individualized but coordinated manner.Sci Signal2017
26754106A draft map of the mouse pluripotent stem cell spatial proteome.Nat Commun2016
27644975Quantitative proteomics and terminomics to elucidate the role of ubiquitination and proteolysis in adaptive immunity.Philos Trans A Math Phys Eng Sci2016
27626298Developing a Multiplexed Quantitative Cross-Linking Mass Spectrometry Platform for Comparative Structural Analysis of Protein Complexes.Anal Chem2016
27709905Complete Molecular Weight Profiling of Low-Molecular Weight Heparins Using Size Exclusion Chromatography-Ion Suppressor-High-Resolution Mass Spectrometry.Anal Chem2016
27559042Glycoproteomics Reveals Decorin Peptides With Anti-Myostatin Activity in Human Atrial Fibrillation.Circulation2016
26525107The paracaspase MALT1 cleaves HOIL1 reducing linear ubiquitination by LUBAC to dampen lymphocyte NF-κB signalling.Nat Commun2015
24926564Proteomic quantification and site-mapping of S-nitrosylated proteins using isobaric iodoTMT reagents.J Proteome Res2014
24796651Novel LC-MS² product dependent parallel data acquisition function and data analysis workflow for sequencing and identification of intact glycopeptides.Anal Chem2014
23345538Glycoproteomic analysis of the secretome of human endothelial cells.Mol Cell Proteomics2013
23764502Interlaboratory study on differential analysis of protein glycosylation by mass spectrometry: the ABRF glycoprotein research multi-institutional study 2012.Mol Cell Proteomics2013
22159718Ultra high resolution linear ion trap Orbitrap mass spectrometer (Orbitrap Elite) facilitates top down LC MS/MS and versatile peptide fragmentation modes.Mol Cell Proteomics2012
22701174Increasing the productivity of glycopeptides analysis by using higher-energy collision dissociation-accurate mass-product-dependent electron transfer dissociation.Int J Proteomics2012
21740066Combining high-energy C-trap dissociation and electron transfer dissociation for protein O-GlcNAc modification site assignment.J Proteome Res2011
20025296Mass spectral analysis of neuropeptide expression and distribution in the nervous system of the lobster Homarus americanus.J Proteome Res2010
20189550A simple cellulose column procedure for selective enrichment of glycopeptides and characterization by nano LC coupled with electron-transfer and high-energy collisional-dissociation tandem mass spectrometry.Carbohydr Res2010
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Collaborators

Lan Huang
University of California Irvine
Co-authored papers 5
Valerian E Kagan
Center for Free Radical and Antioxidant Health, University of Pittsburgh
Co-authored papers 4
Christoph H Borchers
McGill University
Co-authored papers 3
J??rgen Cox
Max-Planck Institute of Biochemistry
Co-authored papers 3
John Rogers
Co-authored papers 3
Evgeniy V Petrotchenko
Lady Davis Institute for Medical Research, Jewish General Hospital, McGill University
Co-authored papers 3
David C Schriemer
University of Calgary, 0 Hospital Drive NW
Co-authored papers 3
Clinton Yu
University of California Irvine
Co-authored papers 3
Scott D Rychnovsky
University of California irvine
Co-authored papers 3
Christopher M Overall
University of British Columbia
Co-authored papers 3
Alexander S Huszagh
University of California irvine
Co-authored papers 3
Richard A Scheltema
Utrecht Institute for Pharmaceutical Sciences, Utrecht University
Co-authored papers 3
David M Horn
Co-authored papers 3
Manuel Mayr
Co-authored papers 3
Albert J R Heck
Utrecht University
Co-authored papers 3
Alexander Leitner
ETH Zurich
Co-authored papers 2
Devin K Schweppe
Co-authored papers 2
Henning Urlaub
Max Planck Institute for Multidisciplinary Sciences
Co-authored papers 2
Florian Stengel
University of Konstanz Universitatsstrasse 10
Co-authored papers 2
Michael R Hoopmann
Institute for Systems Biology
Co-authored papers 2
Nir Kalisman
Institute of Life Sciences, The Hebrew University
Co-authored papers 2
Xiaorong Wang
University of California Irvine
Co-authored papers 2
Petr Nov??k
Institute of Microbiology of the CAS
Co-authored papers 2
Juri Rappsilber
Institute for Biotechnology, Technical University Berlin
Co-authored papers 2
Andrea Sinz
Center for Structural Mass Spectrometry, Martin Luther University Halle-Wittenberg
Co-authored papers 2
Robert L Moritz
Institute for Systems Biology
Co-authored papers 2
Carla Schmidt
Johannes Gutenberg University Mainz
Co-authored papers 2
Michael G??tze
and Pharmacy, Freie Universitat Berlin
Co-authored papers 2
Karl Mechtler
IMP-Institute of Molecular Pathology
Co-authored papers 2
Andrej Sali (CM4AI)
University of California San Francisco
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Release 1.2