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Author Details

Anshul Kundaje
Stanford University.
2004
144
54
PMIDPaper TitleJournal TitlePublished Year
35547855Disease diagnostics using machine learning of immune receptors.bioRxiv2024
35547855Disease diagnostics using machine learning of immune receptors.bioRxiv2024
38030727Identification of constrained sequence elements across 239 primate genomes.Nature2024
37873443Drug Discovery in Low Data Regimes: Leveraging a Computational Pipeline for the Discovery of Novel SARS-CoV-2 Nsp14-MTase Inhibitors.bioRxiv2024
37873443Drug Discovery in Low Data Regimes: Leveraging a Computational Pipeline for the Discovery of Novel SARS-CoV-2 Nsp14-MTase Inhibitors.bioRxiv2024
38030727Identification of constrained sequence elements across 239 primate genomes.Nature2024
36420896GENCODE: reference annotation for the human and mouse genomes in 2023.Nucleic Acids Res2023
36420896GENCODE: reference annotation for the human and mouse genomes in 2023.Nucleic Acids Res2023
37944513RNA polymerase II dynamics and mRNA stability feedback scale mRNA amounts with cell size.Cell2023
37938768Latent human herpesvirus 6 is reactivated in CAR T cells.Nature2023
38014075An encyclopedia of enhancer-gene regulatory interactions in the human genome.bioRxiv2023
37986808Transcriptomics and chromatin accessibility in multiple African population samples.bioRxiv2023
37640106Genome-wide interaction analysis of folate for colorectal cancer risk.Am J Clin Nutr2023
37557175Chromatin accessibility in the Drosophila embryo is determined by transcription factor pioneering and enhancer activation.Dev Cell2023
37873116Transcription factor stoichiometry, motif affinity and syntax regulate single-cell chromatin dynamics during fibroblast reprogramming to pluripotency.bioRxiv2023
37961278The landscape of the histone-organized chromatin of Bdellovibrionota bacteria.bioRxiv2023
37214836<i>De novo</i> distillation of thermodynamic affinity from deep learning regulatory sequence models of <i>in vivo</i> protein-DNA binding.bioRxiv2023
37085898CasKAS: direct profiling of genome-wide dCas9 and Cas9 specificity using ssDNA mapping.Genome Biol2023
36576985Genome-wide Interaction Study with Smoking for Colorectal Cancer Risk Identifies Novel Genetic Loci Related to Tumor Suppression, Inflammation, and Immune Response.Cancer Epidemiol Biomarkers Prev2023
37386249Single-cell multi-omics of mitochondrial DNA disorders reveals dynamics of purifying selection across human immune cells.Nat Genet2023
37066421The ENCODE Uniform Analysis Pipelines.bioRxiv2023
36807070Simultaneous Single-Cell Profiling of the Transcriptome and Accessible Chromatin Using SHARE-seq.Methods Mol Biol2023
36807067Single-Molecule Mapping of Chromatin Accessibility Using NOMe-seq/dSMF.Methods Mol Biol2023
36807060Genome-Wide Mapping of Active Regulatory Elements Using ATAC-seq.Methods Mol Biol2023
37443352Chromatin accessibility dynamics of neurogenic niche cells reveal defects in neural stem cell adhesion and migration during aging.Nat Aging2023
37249599A Genetic Locus within the FMN1/GREM1 Gene Region Interacts with Body Mass Index in Colorectal Cancer Risk.Cancer Res2023
36798324CPA-Perturb-seq: Multiplexed single-cell characterization of alternative polyadenylation regulators.bioRxiv2023
37365285Probing the diabetes and colorectal cancer relationship using gene - environment interaction analyses.Br J Cancer2023
36539618Deciphering colorectal cancer genetics through multi-omic analysis of 100,204 cases and 154,587 controls of European and east Asian ancestries.Nat Genet2023
37503119The ENCODE Uniform Analysis Pipelines.Res Sq2023
37292735SLC12A9 is a lysosome-detoxifying ammonium - chloride co-transporter.bioRxiv2023
36782065Author Correction: Deciphering colorectal cancer genetics through multi-omic analysis of 100,204 cases and 154,587 controls of European and east Asian ancestries.Nat Genet2023
37557175Chromatin accessibility in the Drosophila embryo is determined by transcription factor pioneering and enhancer activation.Dev Cell2023
38014075An encyclopedia of enhancer-gene regulatory interactions in the human genome.bioRxiv2023
37961278The landscape of the histone-organized chromatin of Bdellovibrionota bacteria.bioRxiv2023
37944513RNA polymerase II dynamics and mRNA stability feedback scale mRNA amounts with cell size.Cell2023
37986808Transcriptomics and chromatin accessibility in multiple African population samples.bioRxiv2023
37938768Latent human herpesvirus 6 is reactivated in CAR T cells.Nature2023
37503119The ENCODE Uniform Analysis Pipelines.Res Sq2023
37873116Transcription factor stoichiometry, motif affinity and syntax regulate single-cell chromatin dynamics during fibroblast reprogramming to pluripotency.bioRxiv2023
37640106Genome-wide interaction analysis of folate for colorectal cancer risk.Am J Clin Nutr2023
37292735SLC12A9 is a lysosome-detoxifying ammonium - chloride co-transporter.bioRxiv2023
37085898CasKAS: direct profiling of genome-wide dCas9 and Cas9 specificity using ssDNA mapping.Genome Biol2023
37386249Single-cell multi-omics of mitochondrial DNA disorders reveals dynamics of purifying selection across human immune cells.Nat Genet2023
37249599A Genetic Locus within the FMN1/GREM1 Gene Region Interacts with Body Mass Index in Colorectal Cancer Risk.Cancer Res2023
37214836<i>De novo</i> distillation of thermodynamic affinity from deep learning regulatory sequence models of <i>in vivo</i> protein-DNA binding.bioRxiv2023
37443352Chromatin accessibility dynamics of neurogenic niche cells reveal defects in neural stem cell adhesion and migration during aging.Nat Aging2023
37365285Probing the diabetes and colorectal cancer relationship using gene - environment interaction analyses.Br J Cancer2023
37066421The ENCODE Uniform Analysis Pipelines.bioRxiv2023
36782065Author Correction: Deciphering colorectal cancer genetics through multi-omic analysis of 100,204 cases and 154,587 controls of European and east Asian ancestries.Nat Genet2023
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University of Massachusetts Medical School
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University of Michigan ann arbor
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Merkin Institute for Translational Research, California Institute of Technology
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Stanford University Medical Center
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Center for Personal Dynamic Regulomes, Stanford University
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Massachusetts General Hospital and Harvard Medical School
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Barcelona Institute of Science and Technology
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Altius Institute for Biomedical Sciences
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