Author details

Full Name

Pejman Mohammadi

Affiliation

ORCID

Career Start Year

2013

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36793389	Genome-wide association study finds multiple loci associated with intraocular pressure in HS rats.	Front Genet	2023
37348055	Genetic control of mRNA splicing as a potential mechanism for incomplete penetrance of rare coding variants.	Genetics	2023
37214860	A revamped rat reference genome improves the discovery of genetic diversity in laboratory rats.	bioRxiv	2023
36778406	Genetic control of mRNA splicing as a potential mechanism for incomplete penetrance of rare coding variants.	bioRxiv	2023
36999049	RNA-seq data science: From raw data to effective interpretation.	Front Genet	2023
35100260	Transcription factor regulation of eQTL activity across individuals and tissues.	PLoS Genet	2022
36263809	The regulatory landscape of multiple brain regions in outbred heterogeneous stock rats.	Nucleic Acids Res	2022
35922509	Transcriptome variation in human tissues revealed by long-read sequencing.	Nature	2022
33383480	Allele-specific expression: applications in cancer and technical considerations.	Current Opinion in Genetics and Development	2021
34315903	Integrative genomic analyses identify susceptibility genes underlying COVID-19 hospitalization.	Nat Commun	2021
33349701	Promoter-interacting expression quantitative trait loci are enriched for functional genetic variants.	Nat Genet	2021
33330876	Integrative analyses identify susceptibility genes underlying COVID-19 hospitalization.	medRxiv	2020
32913072	The impact of sex on gene expression across human tissues.	Science	2020
32912332	A vast resource of allelic expression data spanning human tissues.	Genome Biol	2020
30659199	Proteo-Transcriptomic Dynamics of Cellular Response to HIV-1 Infection.	Sci Rep	2019
30478442	A primer on deep learning in genomics.	Nat Genet	2019
30127527	Modified penetrance of coding variants by cis-regulatory variation contributes to disease risk.	Nat Genet	2018
28117342	Corrigendum: Differential expression of lncRNAs during the HIV replication cycle: an underestimated layer in the HIV-host interplay.	Scientific Reports	2017
28814792	Genetic regulatory effects modified by immune activation contribute to autoimmune disease associations.	Nat Commun	2017
29021289	Quantifying the regulatory effect size of <i>cis</i>-acting genetic variation using allelic fold change.	Genome Res	2017
28189580	Automated Design of Synthetic Cell Classifier Circuits Using a Two-Step Optimization Strategy.	Cell Syst	2017
28186168	IFI16 is required for DNA sensing in human macrophages by promoting production and function of cGAMP.	Nat Commun	2017
27782208	Differential expression of lncRNAs during the HIV replication cycle: an underestimated layer in the HIV-host interplay.	Scientific Reports	2016
26342229	BMix: probabilistic modeling of occurring substitutions in PAR-CLIP data.	Bioinformatics	2016
26163509	TiMEx: a waiting time model for mutually exclusive cancer alterations.	Bioinformatics	2016
27605262	Rare variant phasing and haplotypic expression from RNA sequencing with phASER.	Nat Commun	2016
26381377	Tools and best practices for data processing in allelic expression analysis.	Genome Biol	2015
25586146	Bioinformatics and HIV latency.	Curr HIV/AIDS Rep	2015
25565177	Dynamic models of viral replication and latency.	Curr Opin HIV AIDS	2015
26226348	HIV-1 RNAs are Not Part of the Argonaute 2 Associated RNA Interference Pathway in Macrophages.	PLoS One	2015
26642228	The Characteristics of Heterozygous Protein Truncating Variants in the Human Genome.	PLoS Comput Biol	2015
26076473	Correction: 24 Hours in the Life of HIV-1 in a T Cell Line.	PLoS Pathog	2015
24875931	Dynamics of HIV latency and reactivation in a primary CD4+ T cell model.	PLoS Pathog	2014
25058640	Analysis of stop-gain and frameshift variants in human innate immunity genes.	PLoS Comput Biol	2014
23382686	24 hours in the life of HIV-1 in a T cell line.	PLoS Pathog	2013