Author details

Full Name

Burak H Alver

Affiliation

ORCID

Career Start Year

2013

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
34952955	Author Correction: Micro-Meta App: an interactive tool for collecting microscopy metadata based on community specifications.	Nature Methods	2022
35501320	The 4D Nucleome Data Portal as a resource for searching and visualizing curated nucleomics data.	Nat Commun	2022
36323678	Author Correction: The 4D Nucleome Data Portal as a resource for searching and visualizing curated nucleomics data.	Nat Commun	2022
34862503	Micro-Meta App: an interactive tool for collecting microscopy metadata based on community specifications.	Nat Methods	2021
33450522	Resources and challenges for integrative analysis of nuclear architecture data.	Curr Opin Genet Dev	2021
33136153	HiTea: a computational pipeline to identify non-reference transposable element insertions in Hi-C data.	Bioinformatics	2021
32941642	The conserved elongation factor Spn1 is required for normal transcription, histone modifications, and splicing in Saccharomyces cerevisiae.	Nucleic Acids Res	2020
32003786	GiniQC: a measure for quantifying noise in single-cell Hi-C data.	Bioinformatics	2020
31077294	Tibanna: software for scalable execution of portable pipelines on the cloud.	Bioinformatics	2019
30143029	HiGlass: web-based visual exploration and analysis of genome interaction maps.	Genome Biol	2018
28262751	The SWI/SNF chromatin remodelling complex is required for maintenance of lineage specific enhancers.	Nat Commun	2017
28366642	Spt5 Plays Vital Roles in the Control of Sense and Antisense Transcription Elongation.	Mol Cell	2017
27941798	ARID1A loss impairs enhancer-mediated gene regulation and drives colon cancer in mice.	Nat Genet	2017
27941797	SMARCB1-mediated SWI/SNF complex function is essential for enhancer regulation.	Nat Genet	2017
27151365	MNase titration reveals differences between nucleosome occupancy and chromatin accessibility.	Nat Commun	2016
26335049	EMSAR: estimation of transcript abundance from RNA-seq data by mappability-based segmentation and reclustering.	BMC Bioinformatics	2015
25164755	Comparative analysis of the transcriptome across distant species.	Nature	2014
25164756	Comparative analysis of metazoan chromatin organization.	Nature	2014
25158628	Nucleosomal occupancy changes locally over key regulatory regions during cell differentiation and reprogramming.	Nat Commun	2014
23723349	Swi/Snf chromatin remodeling/tumor suppressor complex establishes nucleosome occupancy at target promoters.	Proc Natl Acad Sci U S A	2013
24100010	Spt6 regulates intragenic and antisense transcription, nucleosome positioning, and histone modifications genome-wide in fission yeast.	Mol Cell Biol	2013