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Author Details

Marcel Ramos
Graduate School of Public Health and Health Policy, City University of New York
2016
17
11
PMIDPaper TitleJournal TitlePublished Year
37208161RaggedExperiment: the missing link between genomic ranges and matrices in Bioconductor.Bioinformatics2023
37624866Curated single cell multimodal landmark datasets for R/Bioconductor.PLoS Comput Biol2023
37208161RaggedExperiment: the missing link between genomic ranges and matrices in Bioconductor.Bioinformatics2023
37624866Curated single cell multimodal landmark datasets for R/Bioconductor.PLoS Comput Biol2023
35760813GenomicSuperSignature facilitates interpretation of RNA-seq experiments through robust, efficient comparison to public databases.Nat Commun2022
35760813GenomicSuperSignature facilitates interpretation of RNA-seq experiments through robust, efficient comparison to public databases.Nat Commun2022
32026945Toward a gold standard for benchmarking gene set enrichment analysis.Brief Bioinform2021
32026945Toward a gold standard for benchmarking gene set enrichment analysis.Brief Bioinform2021
31392308CNVRanger: association analysis of CNVs with gene expression and quantitative phenotypes.Bioinformatics2020
32282230Reliable Analysis of Clinical Tumor-Only Whole-Exome Sequencing Data.JCO Clin Cancer Inform2020
32453635Global Alliance for Genomics and Health Meets Bioconductor: Toward Reproducible and Agile Cancer Genomics at Cloud Scale.JCO Clin Cancer Inform2020
32747365Multiomic Analysis of Subtype Evolution and Heterogeneity in High-Grade Serous Ovarian Carcinoma.Cancer Res2020
33119407Multiomic Integration of Public Oncology Databases in Bioconductor.JCO Clin Cancer Inform2020
31392308CNVRanger: association analysis of CNVs with gene expression and quantitative phenotypes.Bioinformatics2020
33119407Multiomic Integration of Public Oncology Databases in Bioconductor.JCO Clin Cancer Inform2020
32747365Multiomic Analysis of Subtype Evolution and Heterogeneity in High-Grade Serous Ovarian Carcinoma.Cancer Res2020
32282230Reliable Analysis of Clinical Tumor-Only Whole-Exome Sequencing Data.JCO Clin Cancer Inform2020
32453635Global Alliance for Genomics and Health Meets Bioconductor: Toward Reproducible and Agile Cancer Genomics at Cloud Scale.JCO Clin Cancer Inform2020
30689687Waldron et al. Reply to "Commentary on the HMP16SData Bioconductor Package".Am J Epidemiol2019
30649166HMP16SData: Efficient Access to the Human Microbiome Project Through Bioconductor.Am J Epidemiol2019
30689687Waldron et al. Reply to "Commentary on the HMP16SData Bioconductor Package".Am J Epidemiol2019
30649166HMP16SData: Efficient Access to the Human Microbiome Project Through Bioconductor.Am J Epidemiol2019
30473781Orchestrating a community-developed computational workshop and accompanying training materials.F1000Res2018
30473781Orchestrating a community-developed computational workshop and accompanying training materials.F1000Res2018
29092936Software for the Integration of Multiomics Experiments in Bioconductor.Cancer Res2017
29092936Software for the Integration of Multiomics Experiments in Bioconductor.Cancer Res2017
29088129Accessible, curated metagenomic data through ExperimentHub.Nat Methods2017
29088129Accessible, curated metagenomic data through ExperimentHub.Nat Methods2017
27381624The Doppelgänger Effect: Hidden Duplicates in Databases of Transcriptome Profiles.J Natl Cancer Inst2016
26280754Deliberative and intuitive risk perceptions as predictors of colorectal cancer screening over time.J Behav Med2016
26463000Public data and open source tools for multi-assay genomic investigation of disease.Brief Bioinform2016
26280754Deliberative and intuitive risk perceptions as predictors of colorectal cancer screening over time.J Behav Med2016
26463000Public data and open source tools for multi-assay genomic investigation of disease.Brief Bioinform2016
27381624The Doppelgänger Effect: Hidden Duplicates in Databases of Transcriptome Profiles.J Natl Cancer Inst2016
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Collaborators

Levi Waldron
City University of New York School of Public Health
Co-authored papers 16
Ludwig Geistlinger
Center for Computational Biomedicine, Harvard Medical School
Co-authored papers 11
Martin Morgan
Roswell Park Comprehensive Cancer Center
Co-authored papers 11
Vincent J Carey
Brigham and Women's Hospital, Harvard Medical School
Co-authored papers 8
Lucas Schiffer
Boston University
Co-authored papers 7
Sehyun Oh
Graduate School of Public Health and Health Policy, City University of New York
Co-authored papers 5
Sean Davis
Johns Hopkins School of Medicine, National Cancer Institute, Princeton University, University of Colorado Anschutz Medical Campus, University of Pittsburgh, University of Washington
Co-authored papers 5
Susan R Davis
Co-authored papers 5
Markus Riester
Novartis Institutes for BioMedical Research
Co-authored papers 4
Rimsha Azhar
City University of New York School of Public Health
Co-authored papers 4
Nitesh Turaga
The University of Melbourne
Co-authored papers 3
Nicola Segata
University of Trento
Co-authored papers 3
Aedin C Culhane
Dana-Farber Cancer Institute & Harvard School of Public Health
Co-authored papers 3
Benjamin Haibe-Kains
Princess Margaret Cancer Centre, University Health Network
Co-authored papers 3
Hanish Kodali
Institute for Healthcare Delivery Science, Icahn School of Medicine at Mount Sinai
Co-authored papers 2
Michael J Birrer
Co-authored papers 2
Angela Re
Fondazione Istituto Italiano di Tecnologia
Co-authored papers 2
Kasper D Hansen
Johns Hopkins University School of Medicine
Co-authored papers 2
Lori Shepherd
Roswell Park Cancer Institute, University of Buffalo
Co-authored papers 2
Giovanni Parmigiani
Dana Farber Cancer Institute.
Co-authored papers 2
David Gomez-Cabrero
King Abdullah University of Science and Technology
Co-authored papers 2
Curtis Huttenhower
Broad Institute of MIT and Harvard
Co-authored papers 2
Ralf Zimmer
Ludwig-Maximilians-Universitat Munchen
Co-authored papers 2
Azfar Basunia
Memorial Sloan Kettering Cancer Center
Co-authored papers 1
Mara Santarelli
Institute for Bioinformatics, Ludwig-Maximilians-Universitat Munchen
Co-authored papers 1
Nehme El-Hachem
Centre Hospitalier Universitaire Sainte-Justine Research Centre
Co-authored papers 1
Rebecca S LaRue
Minnesota Supercomputing Institute, University of Minnesota
Co-authored papers 1
Casey S Greene
Dartmouth College Geisel School of Medicine, Princeton University, University of Colorado Anschutz Medical Campus, University of Pennsylvania Perelman School of Medicine
Co-authored papers 1
Dario Righelli
University of Padova
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Audrey Renson
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Release 1.2