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Author Details

Deborah R Winter
Northwestern University Feinberg School of Medicine
2007
44
24
Nathan Sheffield (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36174229A Novel MIP-1-Expressing Macrophage Subtype in BAL Fluid from Healthy Volunteers.Am J Respir Cell Mol Biol2023
37644108Single-cell sequencing of a novel model of neonatal bile duct ligation in mice identifies macrophage heterogeneity in obstructive cholestasis.Sci Rep2023
37204925Tissue-resident, extravascular Ly6c<sup>-</sup> monocytes are critical for inflammation in the synovium.Cell Rep2023
37131652Suprabasal cells retaining stem cell identity programs drive basal cell hyperplasia in eosinophilic esophagitis.bioRxiv2023
36630461MAGNET: A web-based application for gene set enrichment analysis using macrophage data sets.PLoS One2023
35980963Acyloxyacyl hydrolase regulates microglia-mediated pelvic pain.PLoS One2022
35919523Stromal Transcription Factor 21 Regulates Development of the Renal Stroma <i>via</i> Interaction with Wnt/<i>β</i>-Catenin Signaling.Kidney3602022
33411796Transcriptional profiling of pediatric cholestatic livers identifies three distinct macrophage populations.PLoS One2021
33622735Erratum for Pincus et al., "A Genome-Based Model to Predict the Virulence of Pseudomonas aeruginosa Isolates".mBio2021
33586677The lung microenvironment shapes a dysfunctional response of alveolar macrophages in aging.J Clin Invest2021
33523968Critical role of synovial tissue-resident macrophage niche in joint homeostasis and suppression of chronic inflammation.Sci Adv2021
33981927Neuroimmune interactions and osteoarthritis pain: focus on macrophages.Pain Rep2021
31563831Microglia Adopt Longitudinal Transcriptional Changes After Traumatic Brain Injury.J Surg Res2020
32843552A Genome-Based Model to Predict the Virulence of Pseudomonas aeruginosa Isolates.mBio2020
32174913A Novel Microglia-Specific Transcriptional Signature Correlates With Behavioral Deficits in Neuropsychiatric Lupus.Front Immunol2020
30554520Single-Cell Transcriptomic Analysis of Human Lung Provides Insights into the Pathobiology of Pulmonary Fibrosis.Am J Respir Crit Care Med2019
30174216Lipocalin-2 is a pathogenic determinant and biomarker of neuropsychiatric lupus.J Autoimmun2019
29624415A Beginner's Guide to Analysis of RNA Sequencing Data.Am J Respir Cell Mol Biol2018
30319641Neuropsychiatric Systemic Lupus Erythematosus Is Dependent on Sphingosine-1-Phosphate Signaling.Front Immunol2018
29439295Transcriptional Profiling of Synovial Macrophages Using Minimally Invasive Ultrasound-Guided Synovial Biopsies in Rheumatoid Arthritis.Arthritis Rheumatol2018
29433549Thinking BIG rheumatology: how to make functional genomics data work for you.Arthritis Res Ther2018
29114065Bim suppresses the development of SLE by limiting myeloid inflammatory responses.J Exp Med2017
28102219Corrigendum: The role of the local environment and epigenetics in shaping macrophage identity and their effect on tissue homeostasis.Nat Immunol2017
28959042Mef2C restrains microglial inflammatory response and is lost in brain ageing in an IFN-I-dependent manner.Nat Commun2017
26681458The role of the local environment and epigenetics in shaping macrophage identity and their effect on tissue homeostasis.Nat Immunol2016
28915372Transcriptional Heterogeneity and Lineage Commitment in Myeloid Progenitors.Cell2016
27736644Extracellular Matrix Proteolysis by MT1-MMP Contributes to Influenza-Related Tissue Damage and Mortality.Cell Host Microbe2016
27912059Microbiota Diurnal Rhythmicity Programs Host Transcriptome Oscillations.Cell2016
27454738Co-ChIP enables genome-wide mapping of histone mark co-occurrence at single-molecule resolution.Nat Biotechnol2016
27545347The Spectrum and Regulatory Landscape of Intestinal Innate Lymphoid Cells Are Shaped by the Microbiome.Cell2016
27338705Microglia development follows a stepwise program to regulate brain homeostasis.Science2016
26086135DCs are ready to commit.Nat Immunol2015
26627738Transcriptional Heterogeneity and Lineage Commitment in Myeloid Progenitors.Cell2015
26272294Making the case for chromatin profiling: a new tool to investigate the immune-regulatory landscape.Nat Rev Immunol2015
26348963From mass cytometry to cancer prognosis.Nat Biotechnol2015
26231115Distinct Murine Mucosal Langerhans Cell Subsets Develop from Pre-dendritic Cells and Monocytes.Immunity2015
25103404Immunogenetics. Chromatin state dynamics during blood formation.Science2014
25453760A negative feedback loop of transcription factors specifies alternative dendritic cell chromatin States.Mol Cell2014
25480296Tissue-resident macrophage enhancer landscapes are shaped by the local microenvironment.Cell2014
25123274The role of chromatin dynamics in immune cell development.Immunol Rev2014
23657885DNase-seq predicts regions of rotational nucleosome stability across diverse human cell types.Genome Res2013
21249180Transcription initiation patterns indicate divergent strategies for gene regulation at the chromatin level.PLoS Genet2011
21750106Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity.Genome Res2011
17684564An "Electronic Fluorescent Pictograph" browser for exploring and analyzing large-scale biological data sets.PLoS One2007
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Collaborators

Ido Amit
Weizmann Institute of Science
Co-authored papers 18
Amos Tanay
Weizmann Institute of Science
Co-authored papers 3
Chaim Putterman
Albert Einstein College of Medicine
Co-authored papers 3
Eran Elinav
German Cancer Research Center
Co-authored papers 3
Monique Hinchcliff
Yale School of Medicine
Co-authored papers 3
Andreas Schlitzer
Co-authored papers 2
Gregory E Crawford
Center for Genomic & Computational Biology, Duke University
Co-authored papers 2
Terrence S Furey
University of North Carolina at Chapel Hill
Co-authored papers 2
Florent Ginhoux
Co-authored papers 2
Shalev Itzkovitz
Co-authored papers 2
James J Davis
University of Chicago
Co-authored papers 2
Lingyun Song
Center for Genomic & Computational Biology, Duke University
Co-authored papers 2
Eran Segal
Weizmann Institute of Science
Co-authored papers 1
Nir Friedman
Co-authored papers 1
Linda L Grasfeder
Duke University Medical Center
Co-authored papers 1
Zheng Liu
Chinese Academy of Agricultural Sciences
Co-authored papers 1
Manuel Garber
Co-authored papers 1
Costantino Pitzalis
Co-authored papers 1
Zhancheng Zhang
Co-authored papers 1
Kelly A Whelan
Lewis Katz School of Medicine, Temple University
Co-authored papers 1
Kimberly A Showers
Co-authored papers 1
David L Corcoran
The University of North Carolina at Chapel Hill
Co-authored papers 1
Jason D Lieb
The University of Chicago
Co-authored papers 1
Paul G Giresi
Center for Personal Dynamic Regulomes
Co-authored papers 1
Stefan Gr??f
Heart and Lung Research Institute, University of Cambridge
Co-authored papers 1
S Louis Bridges
Hospital for Special Surgery and Weill Cornell Medical College
Co-authored papers 1
Teresa Vales
Institute of Paper Science and Technology
Co-authored papers 1
Damian Keefe
University of Adelaide
Co-authored papers 1
Zohar Barnett-Itzhaki
Co-authored papers 1
Miriam Merad
The Tisch Cancer Institute, Icahn School of Medicine at Mount Sinai
Co-authored papers 1
Release 1.2