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Author Details

Raymond J Cho
University of California san francisco
1998
55
26
Timothy Clark (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37120815Isolation of human cutaneous immune cells for single-cell RNA sequencing.STAR Protoc2023
37087172Transcriptomics aids differentiation of IL-23 overactivity in a patient with atypical skin and joint disease.Lancet2023
35977472A single-cell transcriptional gradient in human cutaneous memory T cells restricts Th17/Tc17 identity.Cell Rep Med2022
35652725Spectral clustering of single-cell multi-omics data on multilayer graphs.Bioinformatics2022
35427179Classification of human chronic inflammatory skin disease based on single-cell immune profiling.Sci Immunol2022
35958578Defining Patient-Level Molecular Heterogeneity in Psoriasis Vulgaris Based on Single-Cell Transcriptomics.Front Immunol2022
33393080CERKL is upregulated in cutaneous squamous cell carcinoma and maintains cellular sphingolipids and resistance to oxidative stress.Br J Dermatol2021
33664264Evolution of late-stage metastatic melanoma is dominated by aneuploidy and whole genome doubling.Nat Commun2021
32879494Pervasive chromosomal instability and karyotype order in tumour evolution.Nature2020
31911616Multiregion exome sequencing of ovarian immature teratomas reveals 2N near-diploid genomes, paucity of somatic mutations, and extensive allelic imbalances shared across mature, immature, and disseminated components.Mod Pathol2020
33270220CERKL is Upregulated in Cutaneous Squamous Cell Carcinoma and Maintains Cellular Sphingolipids and Resistance to Oxidative Stress.Br J Dermatol2020
33205009Single-Cell Profiling Reveals Divergent, Globally Patterned Immune Responses in Murine Skin Inflammation.iScience2020
32934247Cells from discarded dressings differentiate chronic from acute wounds in patients with Epidermolysis Bullosa.Sci Rep2020
32794969Riemannian geometry and statistical modeling correct for batch effects and control false discoveries in single-cell surface protein count data.Phys Rev E2020
30543901A20 and ABIN1 Suppression of a Keratinocyte Inflammatory Program with a Shared Single-Cell Expression Signature in Diverse Human Rashes.J Invest Dermatol2019
31552090Single-Cell Transcriptomics Reveals Spatial and Temporal Turnover of Keratinocyte Differentiation Regulators.Front Genet2019
31207229Genetic Mutations Underlying Phenotypic Plasticity in Basosquamous Carcinoma.J Invest Dermatol2019
31148199Loss of ZNF750 in ocular and cutaneous sebaceous carcinoma.J Cutan Pathol2019
29273145Emergence and Evolution of Mutational Hotspots in Sun-Damaged Skin.J Invest Dermatol2018
30135250APOBEC mutation drives early-onset squamous cell carcinomas in recessive dystrophic epidermolysis bullosa.Sci Transl Med2018
30355494Transcriptional Programming of Normal and Inflamed Human Epidermis at Single-Cell Resolution.Cell Rep2018
29760388Cell of origin and mutation pattern define three clinically distinct classes of sebaceous carcinoma.Nat Commun2018
27874213Questioning the Clinical Utility of Exome Sequencing in Developing Countries.Pediatr Dermatol2017
27371574Election 2016: Voting on Variants.Cancer Discov2016
26677003Multiple Hereditary Infundibulocystic Basal Cell Carcinoma Syndrome Associated With a Germline SUFU Mutation.JAMA Dermatol2016
25962591Erratum to: Modeling precision treatment of breast cancer.Genome Biol2015
26343386Exome sequencing of desmoplastic melanoma identifies recurrent NFKBIE promoter mutations and diverse activating mutations in the MAPK pathway.Nat Genet2015
26286987Phylogenetic analyses of melanoma reveal complex patterns of metastatic dissemination.Proc Natl Acad Sci U S A2015
24480882No evidence for integrated viral DNA in the genome sequence of cutaneous squamous cell carcinoma.J Invest Dermatol2014
25456125Transcription restores DNA repair to heterochromatin, determining regional mutation rates in cancer genomes.Cell Rep2014
23825651Gauging NOTCH1 Activation in Cancer Using Immunohistochemistry.PLoS One2013
24064421Methods and challenges in timing chromosomal abnormalities within cancer samples.Bioinformatics2013
24176112Modeling precision treatment of breast cancer.Genome Biol2013
22324490Use of an expanded immunohistochemical panel to distinguish cutaneous Hodgkin lymphoma from histopathologic imitators.J Cutan Pathol2012
26875439Next-Generation Diagnostics for Genodermatoses.J Invest Dermatol2012
22965149What are we learning from the cancer genome?Nat Rev Clin Oncol2012
23071029Histology, anatomy, or geography? Exome sequencing begins to delineate somatic mutational differences in esophageal cancer.Cancer Discov2012
23154629Next-generation diagnostics for genodermatoses.J Invest Dermatol2012
22309843The double-edged sword of Notch signaling in cancer.Semin Cell Dev Biol2012
22237701Genetics and epigenetics of the skin meet deep sequence.J Invest Dermatol2012
22006338Loss-of-function mutations in Notch receptors in cutaneous and lung squamous cell carcinoma.Proc Natl Acad Sci U S A2011
21984974Temporal dissection of tumorigenesis in primary cancers.Cancer Discov2011
20377671Marked papillary dermal edema--an unreliable discriminator between polymorphous light eruption and lupus erythematosus or dermatomyositis.J Cutan Pathol2010
21132868Rethinking the prosaicism of mosaicism; is it in us?Exp Dermatol2010
16136080A network-based analysis of systemic inflammation in humans.Nature2005
14582520Computational knowledge integration in biopharmaceutical research.Brief Bioinform2003
11137997Transcriptional regulation and function during the human cell cycle.Nat Genet2001
11115864A simple procedure for the analysis of single nucleotide polymorphisms facilitates map-based cloning in Arabidopsis.Plant Physiol2000
11255683Deriving meaning from genomic information.Biotechnol Genet Eng Rev2000
10973070Transcription, genomes, function.Trends Genet2000
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Collaborators

University of California san francisco
Co-authored papers 11
Co-authored papers 10
Co-authored papers 9
Oregon Health and Science University
Co-authored papers 9
Oregon Health & Science University Hospital.
Co-authored papers 8
Stanford University
Co-authored papers 6
University of Illinois at Urbana-Champaign
Co-authored papers 5
Co-authored papers 4
Co-authored papers 4
Stanford University
Co-authored papers 3
Genentech Inc.
Co-authored papers 3
University of California san francisco
Co-authored papers 3
Co-authored papers 3
Co-authored papers 3
King's College London
Co-authored papers 2
Stanford University
Co-authored papers 2
National Human Genome Research Institute, National Institutes of Health
Co-authored papers 2
University of California San Francisco
Co-authored papers 2
Johns Hopkins University School of Medicine
Co-authored papers 2
Co-authored papers 2
Cardiovascular Research Institute, University of California San Francisco
Co-authored papers 2
Co-authored papers 2
Stanford University
Co-authored papers 2
Stanford University
Co-authored papers 2
Institute of Functional Genomics, University of Regensburg
Co-authored papers 2
National Institutes of Allergy and Infectious Diseases
Co-authored papers 2
Oregon Health Sciences University
Co-authored papers 2
Washington University
Co-authored papers 2
Washington University
Co-authored papers 2
Knight Cancer Institute, Oregon Health and Sciences University
Co-authored papers 2