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Author Details

Miten Jain
Northeastern University
2011
47
23
PMIDPaper TitleJournal TitlePublished Year
37066160Multicellular, IVT-derived, unmodified human transcriptome for nanopore-direct RNA analysis.bioRxiv2024
36938359Microbial isolation and characterization from two flex lines from the urine processor assembly onboard the international space station.Biofilm2023
37710018Scalable Nanopore sequencing of human genomes provides a comprehensive view of haplotype-resolved variation and methylation.Nat Methods2023
37745389Local read haplotagging enables accurate long-read small variant calling.bioRxiv2023
37652985Profiling of repetitive RNA sequences in the blood plasma of patients with cancer.Nat Biomed Eng2023
37612512The complete sequence of a human Y chromosome.Nature2023
37205357A phenome-wide association study of methylated GC-rich repeats identifies a GCC repeat expansion in <i>AFF3</i> as a significant cause of intellectual disability.medRxiv2023
36865218Phased nanopore assembly with Shasta and modular graph phasing with GFAse.bioRxiv2023
34728536Identification of high-confidence human poly(A) RNA isoform scaffolds using nanopore sequencing.RNA2022
35347328Accelerated identification of disease-causing variants with ultra-rapid nanopore genome sequencing.Nat Biotechnol2022
35720974PrecisionFDA Truth Challenge V2: Calling variants from short and long reads in difficult-to-map regions.Cell Genom2022
36203024Advances in nanopore direct RNA sequencing.Nat Methods2022
35133172Ultra-Rapid Nanopore Whole Genome Genetic Diagnosis of Dilated Cardiomyopathy in an Adolescent With Cardiogenic Shock.Circ Genom Precis Med2022
35244721Nanopore ReCappable sequencing maps SARS-CoV-2 5' capping sites and provides new insights into the structure of sgRNAs.Nucleic Acids Res2022
35020984Ultrarapid Nanopore Genome Sequencing in a Critical Care Setting.N Engl J Med2022
33467183Real-Time Culture-Independent Microbial Profiling Onboard the International Space Station Using Nanopore Sequencing.Genes (Basel)2021
33794196Pervasive cis effects of variation in copy number of large tandem repeats on local DNA methylation and gene expression.Am J Hum Genet2021
33851162A new SARS-CoV-2 lineage that shares mutations with known Variants of Concern is rejected by automated sequence repository quality control.bioRxiv2021
33758101miRNA-independent function of long noncoding pri-miRNA loci.Proc Natl Acad Sci U S A2021
34618430Direct Nanopore Sequencing of Individual Full Length tRNA Strands.ACS Nano2021
34725481Haplotype-aware variant calling with PEPPER-Margin-DeepVariant enables high accuracy in nanopore long-reads.Nat Methods2021
34446532Synthesis of modified nucleotide polymers by the poly(U) polymerase Cid1: application to direct RNA sequencing on nanopores.RNA2021
34146471A community challenge to evaluate RNA-seq, fusion detection, and isoform quantification methods for cancer discovery.Cell Syst2021
34085238Adaptation of Human Ribosomal RNA for Nanopore Sequencing of Canonical and Modified Nucleotides.Methods Mol Biol2021
34047695Inflammation drives alternative first exon usage to regulate immune genes including a novel iron-regulated isoform of <i>Aim2</i>.Elife2021
32520351Metagenomic analysis of planktonic riverine microbial consortia using nanopore sequencing reveals insight into river microbe taxonomy and function.Gigascience2020
31936690Off Earth Identification of Bacterial Populations Using 16S rDNA Nanopore Sequencing.Genes (Basel)2020
31819268Author Correction: Nanopore native RNA sequencing of a human poly(A) transcriptome.Nat Methods2020
32775697Permutational analysis of <i>Saccharomyces cerevisiae</i> regulatory elements.Synth Biol (Oxf)2020
32578857Corrigendum to: Metagenomic analysis of planktonic riverine microbial consortia using nanopore sequencing reveals insight into river microbe taxonomy and function.Gigascience2020
32686750Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes.Nat Biotechnol2020
32937144A Survey of Rare Epigenetic Variation in 23,116 Human Genomes Identifies Disease-Relevant Epivariations and CGG Expansions.Am J Hum Genet2020
32597959Gaussian mixture model-based unsupervised nucleotide modification number detection using nanopore-sequencing readouts.Bioinformatics2020
31095620Reading canonical and modified nucleobases in 16S ribosomal RNA using nanopore native RNA sequencing.PLoS One2019
29273626MinION-based long-read sequencing and assembly extends the <i>Caenorhabditis elegans</i> reference genome.Genome Res2018
30461375Resolving the complex Bordetella pertussis genome using barcoded nanopore sequencing.Microb Genom2018
29553574Linear assembly of a human centromere on the Y chromosome.Nat Biotechnol2018
29431738Nanopore sequencing and assembly of a human genome with ultra-long reads.Nat Biotechnol2018
28794860MinION Analysis and Reference Consortium: Phase 2 data release and analysis of R9.0 chemistry.F1000Res2017
28218897Mapping DNA methylation with high-throughput nanopore sequencing.Nat Methods2017
28722025Nanopore long-read RNAseq reveals widespread transcriptional variation among the surface receptors of individual B cells.Nat Commun2017
27887629The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community.Genome Biol2016
27964738Erratum to: The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community.Genome Biol2016
25686389Improved data analysis for the MinION nanopore sequencer.Nat Methods2015
26834992MinION Analysis and Reference Consortium: Phase 1 data release and analysis.F1000Res2015
24501022Centromere reference models for human chromosomes X and Y satellite arrays.Genome Res2014
21964054Cancer vaccines and carbohydrate epitopes.Vaccine2011
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McGill University
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Courtney J Wusthoff
Stanford University School of Medicine
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Oscar L Rodriguez
University of Louisville School of Medicine
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Nicholas J Loman
University of Birmingham
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Lars Hestbjerg Hansen
Co-authored papers 2
Ian T Fiddes
Liver Center and Diabetes Center, University of California san francisco
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Nathan D Olson
National Institute of Standards and Technology
Co-authored papers 2
Mathieu Bourgey
McGill University
Co-authored papers 1
Brian J Haas
Broad Institute of MIT and Harvard
Co-authored papers 1
Release 1.2