Author details

Full Name

John L Rinn

Affiliation

ORCID

Career Start Year

1963

Papers

170

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36596869	Long non-coding RNAs: definitions, functions, challenges and recommendations.	Nat Rev Mol Cell Biol	2023
37645830	Evaluation of the RNA-dependence of PRC2 binding to chromatin in human pluripotent stem cells.		2023
37980569	High-throughput functional analysis of regulatory variants using a massively parallel reporter assay.		2023
36719724	is a transiently expressed non-coding RNA essential for human endoderm formation.		2023
36574982	DNMT1 inhibition by pUG-fold quadruplex RNA.		2023
37391481	Single-cell profiling of lncRNA expression during Ebola virus infection in rhesus macaques.	Nat Commun	2023
35304421	Evolutionary divergence of localization and expression.	RNA	2022
35971133	Prolonged FOS activity disrupts a global myogenic transcriptional program by altering 3D chromatin architecture in primary muscle progenitor cells.	Skelet Muscle	2022
35998472	Editorial overview: The genome in space-time.	Current Opinion in Genetics and Development	2022
35474001	Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes.	Nature	2022
34837040	From genotype to phenotype: genetics of mammalian long non-coding RNAs in vivo.	Nature Reviews Genetics	2022
35179489	Mosaic cis-regulatory evolution drives transcriptional partitioning of HERVH endogenous retrovirus in the human embryo.	Elife	2022
34752748	Diverse epigenetic mechanisms maintain parental imprints within the embryonic and extraembryonic lineages.	Dev Cell	2021
34166368	Genome-wide binding analysis of 195 DNA binding proteins reveals "reservoir" promoters and human specific SVA-repeat family regulation.	PLoS ONE	2021
33895132	Myosin 7b is a regulatory long noncoding RNA (lncMYH7b) in the human heart.	Journal of Biological Chemistry	2021
33667549	Defective insulin receptor signaling in hPSCs skews pluripotency and negatively perturbs neural differentiation.	J Biol Chem	2021
33446502	An in vivo screen of noncoding loci reveals that <i>Daedalus</i> is a gatekeeper of an Ikaros-dependent checkpoint during haematopoiesis.	Proc Natl Acad Sci U S A	2021
34083519	Nuclear compartmentalization of TERT mRNA and TUG1 lncRNA is driven by intron retention.	Nat Commun	2021
33048844	Identification of human long noncoding RNAs associated with nonalcoholic fatty liver disease and metabolic homeostasis.	Journal of Clinical Investigation	2021
34791665	Noncoding RNAs: biology and applications-a Keystone Symposia report.	Ann N Y Acad Sci	2021
34675241	Publisher Correction: Nuclear compartmentalization of TERT mRNA and TUG1 lncRNA is driven by intron retention.	Nat Commun	2021
34731163	Genome-wide CRISPR interference screen identifies long non-coding RNA loci required for differentiation and pluripotency.	PLoS ONE	2021
33159858	Single-Cell Profiling of Ebola Virus Disease InÂ Vivo Reveals Viral and Host Dynamics.	Cell	2020
32243843	Mitoregulin Controls Î²-Oxidation in Human and Mouse Adipocytes.	Stem Cell Reports	2020
32239644	Resolving mechanisms of immune-mediated disease in primary CD4 T cells.	EMBO Molecular Medicine	2020
32286318	The Sox2 transcription factor binds RNA.	Nature Communications	2020
32819422	Cis and trans effects differentially contribute to the evolution of promoters and enhancers.		2020
33247132	Trans- and cis-acting effects of Firre on epigenetic features of the inactive X chromosome.	Nat Commun	2020
32632336	RNA is essential for PRC2 chromatin occupancy and function in human pluripotent stem cells.	Nature Genetics	2020
32569523	Long Noncoding RNAs: Molecular Modalities to Organismal Functions.	Annu Rev Biochem	2020
33230299	Common variants in signaling transcription-factor-binding sites drive phenotypic variability in red blood cell traits.	Nat Genet	2020
32728249	Expanded encyclopaedias of DNA elements in the human and mouse genomes.	Nature	2020
32894169	The Tug1 lncRNA locus is essential for male fertility.		2020
31043413	Illuminating Genomic Dark Matter with RNA Imaging.	Cold Spring Harbor perspectives in biology	2019
31601736	Linking long noncoding RNA to drug resistance.	Proceedings of the National Academy of Sciences of the United States of America	2019
31738164	In vivo <i>Firre</i> and <i>Dxz4</i> deletion elucidates roles for autosomal gene regulation.	Elife	2019
31723143	The Firre locus produces a trans-acting RNA molecule that functions in hematopoiesis.	Nat Commun	2019
30181316	Interchromosomal interactions: A genomic love story of kissing chromosomes.	Journal of Cell Biology	2019
31451652	Single-cell imaging reveals unexpected heterogeneity of telomerase reverse transcriptase expression across human cancer cell lines.	Proceedings of the National Academy of Sciences of the United States of America	2019
31448565	Differential contribution of steady-state RNA and active transcription in chromatin organization.	EMBO Rep	2019
30683753	High-throughput functional analysis of lncRNA core promoters elucidates rules governing tissue specificity.	Genome Research	2019
31548358	RNA-seq as a tool for evaluating human embryo competence.	Genome Research	2019
29358654	Genetic determinants and epigenetic effects of pioneer-factor occupancy.	Nat Genet	2018
30404006	Genetic Models Reveal cis and trans Immune-Regulatory Activities for lincRNA-Cox2.	Cell Rep	2018
29921581	Reorganization of chromosomal interactions in the 2q37-deletion syndrome.	EMBO Journal	2018
30537984	Enhancers in the Peril lincRNA locus regulate distant but not local genes.		2018
30195438	Aligning Single-Cell Developmental and Reprogramming Trajectories Identifies Molecular Determinants of Myogenic Reprogramming Outcome.	Cell Syst	2018
29625070	A CLK3-HMGA2 Alternative Splicing Axis Impacts Human Hematopoietic Stem Cell Molecular Identity throughout Development.	Cell Stem Cell	2018
29625035	Inter-chromosomal Contact Properties in Live-Cell Imaging and in Hi-C.	Molecular Cell	2018
29526697	Inter-chromosomal Contact Properties in Live-Cell Imaging and in Hi-C.	Molecular Cell	2018