Author details

Full Name

Nir Kalisman

Affiliation

Institute of Life Sciences, The Hebrew University

ORCID

Career Start Year

2003

Papers

H Index

Expertise

CM4AI Collaborator

Andrej Sali (CM4AI)

PMID	Paper Title	Journal Title	Published Year
36809765	Structural and dynamic insights into Î±-synuclein dimer conformations.	Structure	2023
36656466	Low-Dose Colchicine Attenuates Sepsis-Induced Liver Injury: A Novel Method for Alleviating Systemic Inflammation.	Inflammation	2023
36882853	The double homeodomain protein DUX4c is associated with regenerating muscle fibers and RNA-binding proteins.	Skelet Muscle	2023
35682755	De Novo Development of Mitochondria-Targeted Molecular Probes Targeting Pink1.	Int J Mol Sci	2022
34373319	Targeted in situ cross-linking mass spectrometry and integrative modeling reveal the architectures of three proteins from SARS-CoV-2.	Proc Natl Acad Sci U S A	2021
34015255	The structural heterogeneity of Î±-synuclein is governed by several distinct subpopulations with interconversion times slower than milliseconds.	Structure	2021
34151562	Facilitating In Situ Cross-Linking and Mass Spectrometry by Antibody-Based Protein Enrichment.	J Proteome Res	2021
32561732	Mass spectrometry reveals the chemistry of formaldehyde cross-linking in structured proteins.	Nat Commun	2020
33237725	Open Search Strategy for Inferring the Masses of Cross-Link Adducts on Proteins.	Anal Chem	2020
33065067	Toward Increased Reliability, Transparency, and Accessibility in Cross-linking Mass Spectrometry.	Structure	2020
30830798	Integrative Structure Modeling: Overview and Assessment.	Annu Rev Biochem	2019
31353180	Structure of the Human Core Centromeric Nucleosome Complex.	Curr Biol	2019
31045356	First Community-Wide, Comparative Cross-Linking Mass Spectrometry Study.	Anal Chem	2019
29605915	Structural Analysis of Protein Complexes by Cross-Linking and Mass Spectrometry.	Methods Mol Biol	2018
30293812	Automatic Inference of Sequence from Low-Resolution Crystallographic Data.	Structure	2018
29180430	Def1 interacts with TFIIH and modulates RNA polymerase II transcription.	Proc Natl Acad Sci U S A	2017
27578865	Archaeal flagellin combines a bacterial type IV pilin domain with an Ig-like domain.	Proc Natl Acad Sci U S A	2016
26483468	Structure of an RNA polymerase II preinitiation complex.	Proc Natl Acad Sci U S A	2015
23478063	The crystal structures of the eukaryotic chaperonin CCT reveal its functional partitioning.	Structure	2013
24072820	Architecture of an RNA polymerase II transcription pre-initiation complex.	Science	2013
22308438	Subunit order of eukaryotic TRiC/CCT chaperonin by cross-linking, mass spectrometry, and combinatorial homology modeling.	Proc Natl Acad Sci U S A	2012
21491495	Structure-based identification of catalytic residues.	Proteins	2011
21319754	Synthesis and characterization of Au102(p-MBA)44 nanoparticles.	J Am Chem Soc	2011
19908377	Insights into the intra-ring subunit order of TRiC/CCT: a structural and evolutionary analysis.	Pac Symp Biocomput	2010
20589633	Consistent refinement of submitted models at CASP using a knowledge-based potential.	Proteins	2010
18186478	Differentiable, multi-dimensional, knowledge-based energy terms for torsion angle probabilities and propensities.	Proteins	2008
18510728	Prediction of structural stability of short beta-hairpin peptides by molecular dynamics and knowledge-based potentials.	BMC Struct Biol	2008
15630093	The neocortical microcircuit as a tabula rasa.	Proc Natl Acad Sci U S A	2005
16105898	MESHI: a new library of Java classes for molecular modeling.	Bioinformatics	2005
12647228	Deriving physical connectivity from neuronal morphology.	Biol Cybern	2003

1 - 30 of 30

Daniel J Saltzberg

University of California san francisco

Career Start Year 2014

Number of shared co-authors 3

Shruthi Viswanath

National Center for Biological Sciences, Tata Institute of Fundamental Research

Career Start Year 2013

Number of shared co-authors 6

Ilan E Chemmama

University of California san francisco

Career Start Year 2012

Number of shared co-authors 6

Thomas Walzthoeni

Institute for Computational Biology

Career Start Year 2008

Number of shared co-authors 4

Panagiotis L Kastritis

Interdisciplinary Research Center HALOmem, Martin Luther University Halle-Wittenberg

Career Start Year 2007

Number of shared co-authors 7

Keren Lasker

The Scripps Research Institute

Career Start Year 2007

Number of shared co-authors 4

Frank DiMaio

University of Washington

Career Start Year 2006

Number of shared co-authors 11

Seung Joong Kim

Korea Advanced Institute of Science and Technology (KAIST)

Career Start Year 2006

Number of shared co-authors 6

Riccardo Pellarin

CNRS UMR 5086 and Universite Claude Bernard Lyon 1

Career Start Year 2003

Number of shared co-authors 12

Yao Cong

University of Chinese Academy of Sciences

Career Start Year 2003

Number of shared co-authors 5

Gabriel C Lander

The Scripps Research Institute

Career Start Year 2003

Number of shared co-authors 4

Maya Topf

Leibniz-Institut fur Virologie (LIV)

Career Start Year 2001

Number of shared co-authors 5

Matteo Dal Peraro

Institute of Bioengineering

Career Start Year 2001

Number of shared co-authors 6

Feixia Chu

University of New Hampshire

Career Start Year 1999

Number of shared co-authors 5

Jo??o P G L M Rodrigues

Stanford University

Career Start Year 1999

Number of shared co-authors 5

Matthew L Baker

McGovern Medical School at the University of Texas Health Science Center

Career Start Year 1998

Number of shared co-authors 4

Yifan Cheng

Quantitative Bioscience Institute, University of California san francisco

Career Start Year 1997

Number of shared co-authors 4

Shira Albeck

Weizmann Institute of Science

Career Start Year 1996

Number of shared co-authors 2

Se??n I O'Donoghue

University of NSW

Career Start Year 1991

Number of shared co-authors 1

Gerard J Kleywegt

European Bioinformatics Institute (EMBL-EBI)

Career Start Year 1990

Number of shared co-authors 6

Friedrich F??rster

Utrecht University

Career Start Year 1990

Number of shared co-authors 7

Roland L Dunbrack

Fox Chase Cancer Center

Career Start Year 1989

Number of shared co-authors 5

Miriam Eisenstein

Weizmann Institute of Science

Career Start Year 1988

Number of shared co-authors 3

Henning Stahlberg

Ecole Polytechnique Federale de Lausanne (EPFL), University of Lausanne

Career Start Year 1988

Number of shared co-authors 4

David T Jones

University College London

Career Start Year 1977

Number of shared co-authors 1

David A Agard

University of California, USA Quantitative Biosciences Institute (QBI) san francisco

Career Start Year 1977

Number of shared co-authors 10

Shoshana J Wodak

VIB-VUB Center for Structural Biology

Career Start Year 1975

Number of shared co-authors 4

Andras Fiser

Albert Einstein College of Medicine

Career Start Year 1968

Number of shared co-authors 5

David Eisenberg

university of california los angeles

Career Start Year 1963

Number of shared co-authors 0

Jens Meiler

Vanderbilt University

Career Start Year 1954

Number of shared co-authors 7

row(s) 1 - 30 of 30

Michael Levitt

Stanford University

Co-authored papers 6

David A Bushnell

Stanford University

Co-authored papers 3

Roger D Kornberg

Stanford University

Co-authored papers 3

Christoph H Borchers

McGill University

Co-authored papers 2

Nikolay V Dokholyan

Pennsylvania State University College of Medicine

Co-authored papers 2

Rosa Viner

University of California (Davis)

Co-authored papers 2

Fabio C Gozzo

Institute of Chemistry, University of Campinas

Co-authored papers 2

Dina Schneidman-Duhovny

The Hebrew University of Jerusalem

Co-authored papers 2

Frank Sobott

University of Antwerp, University of Leeds

Co-authored papers 2

Meng-Qiu Dong

National Institute of Biological Sciences

Co-authored papers 2

J??rgen Cox

Max-Planck Institute of Biochemistry

Co-authored papers 2

Evgeniy V Petrotchenko

Lady Davis Institute for Medical Research, Jewish General Hospital, McGill University

Co-authored papers 2

David C Schriemer

University of Calgary, 0 Hospital Drive NW

Co-authored papers 2

Lan Huang

University of California Irvine

Co-authored papers 2

Florian Stengel

University of Konstanz Universitatsstrasse 10

Co-authored papers 2

Michael R Hoopmann

Institute for Systems Biology

Co-authored papers 2

Richard A Scheltema

Utrecht Institute for Pharmaceutical Sciences, Utrecht University

Co-authored papers 2

Petr Nov??k

Institute of Microbiology of the CAS

Co-authored papers 2

Juri Rappsilber

Institute for Biotechnology, Technical University Berlin

Co-authored papers 2

Andrea Sinz

Center for Structural Mass Spectrometry, Martin Luther University Halle-Wittenberg

Co-authored papers 2

Robert L Moritz

Institute for Systems Biology

Co-authored papers 2

Gunnar F Schr??der

Institute of Biological Information Processing (Structural Biochemistry)

Co-authored papers 2

Carla Schmidt

Johannes Gutenberg University Mainz

Co-authored papers 2

Alexander Leitner

ETH Zurich

Co-authored papers 2

Michael G??tze

and Pharmacy, Freie Universitat Berlin

Co-authored papers 2

Albert J R Heck

Utrecht University

Co-authored papers 2

Karl Mechtler

IMP-Institute of Molecular Pathology

Co-authored papers 2

Andrej Sali (CM4AI)

University of California San Francisco

Co-authored papers 1

Yi Shi

Department of Pharmacological Sciences, Icahn School of Medicine at Mount Sinai

Co-authored papers 1

Yasushi Ishihama

Graduate School of Pharmaceutical Sciences, Kyoto University

Co-authored papers 1

1 - 30

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