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Author Details

Songjoon Baek
Center for Cancer Research, National Cancer Institute
2006
53
31
Nathan Sheffield (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
35235361Oncogenic lncRNAs alter epigenetic memory at a fragile chromosomal site in human cancer cells.Sci Adv2022
35733248Single-cell transcriptome and accessible chromatin dynamics during endocrine pancreas development.Proc Natl Acad Sci U S A2022
35882235Transcription factors TCF-1 and GATA3 are key factors for the epigenetic priming of early innate lymphoid progenitors toward distinct cell fates.Immunity2022
36344675Identification of a novel GR-ARID1a-P53BP1 protein complex involved in DNA damage repair and cell cycle regulation.Oncogene2022
34375333Corticosterone pattern-dependent glucocorticoid receptor binding and transcriptional regulation within the liver.PLoS Genet2021
32497898WHSC1 monomethylates histone H1 and induces stem-cell like features in squamous cell carcinoma of the head and neck.Neoplasia2020
32843559Erratum for Kweon et al., "Substrate Specificity and Structural Characteristics of the Novel Rieske Nonheme Iron Aromatic Ring-Hydroxylating Oxygenases NidAB and NidA3B3 from Mycobacterium vanbaalenii PYR-1".mBio2020
30679562High Quality ATAC-Seq Data Recovered from Cryopreserved Breast Cell Lines and Tissue.Sci Rep2019
31164146XL-DNase-seq: improved footprinting of dynamic transcription factors.Epigenetics Chromatin2019
29898962Dual Roles for Ikaros in Regulation of Macrophage Chromatin State and Inflammatory Gene Expression.J Immunol2018
28071704High fat diet-induced changes of mouse hepatic transcription and enhancer activity can be reversed by subsequent weight loss.Sci Rep2017
28200020Genome-Wide Identification of Basic Helix-Loop-Helix and NF-1 Motifs Underlying GR Binding Sites in Male Rat Hippocampus.Endocrinology2017
29185442Synergistic gene expression during the acute phase response is characterized by transcription factor assisted loading.Nat Commun2017
28538187Bivariate Genomic Footprinting Detects Changes in Transcription Factor Activity.Cell Rep2017
28801231Anti-Inflammatory Chromatinscape Suggests Alternative Mechanisms of Glucocorticoid Receptor Action.Immunity2017
28031249Transcription factor assisted loading and enhancer dynamics dictate the hepatic fasting response.Genome Res2017
26997247Cajal bodies are linked to genome conformation.Nat Commun2016
26890492Genome-Wide Chromatin Landscape Transitions Identify Novel Pathways in Early Commitment to Osteoblast Differentiation.PLoS One2016
26914206Genome-wide footprinting: ready for prime time?Nat Methods2016
27062924Steroid Receptors Reprogram FoxA1 Occupancy through Dynamic Chromatin Transitions.Cell2016
27008018Genome-Scale Analysis of Cell-Specific Regulatory Codes Using Nuclear Enzymes.Methods Mol Biol2016
25373146Genome accessibility is widely preserved and locally modulated during mitosis.Genome Res2015
25916672Transcriptional activation by the thyroid hormone receptor through ligand-dependent receptor recruitment and chromatin remodelling.Nat Commun2015
25677181Dynamics of chromatin accessibility and long-range interactions in response to glucocorticoid pulsing.Genome Res2015
25788983CENP-A nucleosomes localize to transcription factor hotspots and subtelomeric sites in human cancer cells.Epigenetics Chromatin2015
24317492Overlapping chromatin-remodeling systems collaborate genome wide at dynamic chromatin transitions.Nat Struct Mol Biol2014
25242143DNase footprint signatures are dictated by factor dynamics and DNA sequence.Mol Cell2014
24945803Promoter-bound p300 complexes facilitate post-mitotic transmission of transcriptional memory.PLoS One2014
24857666Molecular architecture of transcription factor hotspots in early adipogenesis.Cell Rep2014
23212947Spatial congregation of STAT binding directs selective nuclear architecture during T-cell functional differentiation.Genome Res2013
24360274Interactome maps of mouse gene regulatory domains reveal basic principles of transcriptional regulation.Cell2013
23665916C/EBP maintains chromatin accessibility in liver and facilitates glucocorticoid receptor recruitment to steroid response elements.EMBO J2013
23803465Reprogramming the chromatin landscape: interplay of the estrogen and glucocorticoid receptors at the genomic level.Cancer Res2013
23385593Genome-wide profiles of CtBP link metabolism with genome stability and epithelial reprogramming in breast cancer.Nat Commun2013
22183609Quantitative analysis of genome-wide chromatin remodeling.Methods Mol Biol2012
23176727Analysis of the peroxisome proliferator-activated receptor-β/δ (PPARβ/δ) cistrome reveals novel co-regulatory role of ATF4.BMC Genomics2012
22734930Rapid genome-scale mapping of chromatin accessibility in tissue.Epigenetics Chromatin2012
21427703Extensive chromatin remodelling and establishment of transcription factor 'hotspots' during early adipogenesis.EMBO J2011
21701563DNA methylation status predicts cell type-specific enhancer activity.EMBO J2011
21725022Polycyclic aromatic hydrocarbon metabolic network in Mycobacterium vanbaalenii PYR-1.J Bacteriol2011
20439994Histone H1 phosphorylation is associated with transcription by RNA polymerases I and II.J Cell Biol2010
20714442Substrate specificity and structural characteristics of the novel Rieske nonheme iron aromatic ring-hydroxylating oxygenases NidAB and NidA3B3 from Mycobacterium vanbaalenii PYR-1.mBio2010
19267313Human organ/tissue growth algorithms that include obese individuals and black/white population organ weight similarities from autopsy data.J Toxicol Environ Health A2009
19346320Development of biomarker classifiers from high-dimensional data.Brief Bioinform2009
19081231A model-free ensemble method for class prediction with application to biomedical decision making.Artif Intell Med2009
19095015ClassRHO: a platform for classification of bacterial rieske non-heme iron ring-hydroxylating oxygenases.J Microbiol Methods2009
18387195A new classification system for bacterial Rieske non-heme iron aromatic ring-hydroxylating oxygenases.BMC Biochem2008
18781521Identifying high-dimensional biomarkers for personalized medicine via variable importance ranking.J Biopharm Stat2008
17719213Ensemble methods for classification of patients for personalized medicine with high-dimensional data.Artif Intell Med2007
17889618Dynamical characteristics of bacteria clustering by self-generated attractants.Comput Biol Chem2007
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Collaborators

Gordon L Hager
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Sam John
National Cancer Institute
Co-authored papers 9
Stafford L Lightman
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Co-authored papers 3
John A Stamatoyannopoulos
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Thomas A Johnson
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National Center for Advancing Translational Sciences, National Institutes of Health
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Eunice Kennedy Shriver National Institute of Child Health and Human Development
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Ross C Hardison
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Universitat Autonoma de Barcelona
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Saint Mary's College of California
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Columbia University
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VILLUM Center for Bioanalytical Sciences, University of Southern Denmark
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Robert E Thurman
University of Washington
Co-authored papers 1
Robert L Walker
Center for Cancer Research, National Cancer Institute, National Institutes of Health
Co-authored papers 1
Thomas Ried
Center for Cancer Research, National Cancer Institute
Co-authored papers 1
Albin Sandelin
University of Copenhagen
Co-authored papers 1
Maxwell P Lee
National Cancer Institute, National Institutes of Health
Co-authored papers 1
Cecil M Benitez
university of california los angeles Jonsson Comprehensive Cancer Center.
Co-authored papers 1
Christopher Ryan Miller
University of Illinois at Urbana-Champaign
Co-authored papers 1
Dong Wook Kim
Yonsei University College of Medicine, Republic of Korea S. Biomedics Co.
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Seung K Kim
Stanford University School of Medicine
Co-authored papers 1
Frank J Gonzalez
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Hai Fang
University of Bristol
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Release 1.2