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Author Details

Aleksandar D Kostic
2011
53
34
PMIDPaper TitleJournal TitlePublished Year
37022232Quantifying Shared and Unique Gene Content across 17 Microbial Ecosystems.mSystems2023
35235560Systematically assessing microbiome-disease associations identifies drivers of inconsistency in metagenomic research.PLoS Biol2022
35968975Resources to Facilitate Use of the Altered Schaedler Flora (ASF) Mouse Model to Study Microbiome Function.mSystems2022
35421341The human microbiome: A coming of age story.2022
36482486Reproducible and opposing gut microbiome signatures distinguish autoimmune diseases and cancers: a systematic review and meta-analysis.Microbiome2022
34636670Using Cartesian Doubt To Build a Sequencing-Based View of Microbiology.mSystems2021
34006865Gene-level metagenomic architectures across diseases yield high-resolution microbiome diagnostic indicators.Nat Commun2021
33883567Circulating short and medium chain fatty acids are associated with normoalbuminuria in type 1 diabetes of long duration.Scientific Reports2021
33981035Reconstruction of ancient microbial genomes from the human gut.Nature2021
33392418Mechanisms of microbial-neuronal interactions in pain and nociception.Neurobiology of Pain2021
34555021Leveraging vibration of effects analysis for robust discovery in observational biomedical data science.PLoS Biol2021
32444144Reply to "Is physical performance (in mice) increased by Veillonella atypica or decreased by Lactobacillus bulgaricus?"Journal of Sport and Health Science2020
32402238An Immunologic Mode of Multigenerational Transmission Governs a Gut Treg Setpoint.Cell2020
32392251A systematic machine learning and data type comparison yields metagenomic predictors of infant age, sex, breastfeeding, antibiotic usage, country of origin, and delivery type.PLoS Comput Biol2020
32337106CoproID predicts the source of coprolites and paleofeces using microbiome composition and host DNA content.PeerJ2020
30709844A perfect storm: Genetics and anticommensal antibodies shore up type 1 diabetes.Science immunology2019
30445663Understanding the growing epidemic of type 2 diabetes in the Hispanic population living in the United States.Diabetes/Metabolism Research and Reviews2019
31235964Meta-omics analysis of elite athletes identifies a performance-enhancing microbe that functions via lactate metabolism.Nat Med2019
31071294Bacteroides-Derived Sphingolipids Are Critical for Maintaining Intestinal Homeostasis and Symbiosis.Cell Host Microbe2019
31415755The Landscape of Genetic Content in the Gut and Oral Human Microbiome.Cell Host Microbe2019
30666959The Crohn's disease polymorphism, <i>ATG16L1</i> T300A, alters the gut microbiota and enhances the local Th1/Th17 response.Elife2019
31316056Predictive metabolomic profiling of microbial communities using amplicon or metagenomic sequences.Nat Commun2019
29539432Diet, Genetics, and the Gut Microbiome Drive Dynamic Changes in Plasma Metabolites.Cell Rep2018
30228205<i>Fusobacterium nucleatum</i> in Colorectal Cancer Relates to Immune Response Differentially by Tumor Microsatellite Instability Status.Cancer Immunol Res2018
29228186Aether: leveraging linear programming for optimal cloud computing in genomics.Bioinformatics2018
29702299Diets That Promote Colon Inflammation Associate With Risk of Colorectal Carcinomas That Contain Fusobacterium nucleatum.Clin Gastroenterol Hepatol2018
29293960Assessment of the cPAS-based BGISEQ-500 platform for metagenomic sequencing.Gigascience2018
27959634Emerging Concepts and Technologies for the Discovery of Microorganisms Involved in Human Disease.Annu Rev Pathol2017
28441565Gut Microbiota: Small Molecules Modulate Host Cellular Functions.Current Biology2017
28696303Intestinal virome changes precede autoimmunity in type I diabetes-susceptible children.Proc Natl Acad Sci U S A2017
28279336A Microbiome Foundation for the Study of Crohn's Disease.Cell Host Microbe2017
28125762Association of Dietary Patterns With Risk of Colorectal Cancer Subtypes Classified by Fusobacterium nucleatum in Tumor Tissue.JAMA Oncol2017
27811909Fusobacterium nucleatum in Colorectal Carcinoma Tissue According to Tumor Location.Clin Transl Gastroenterol2016
27412252Dysbiosis, inflammation, and response to treatment: a longitudinal study of pediatric subjects with newly diagnosed inflammatory bowel disease.Genome Med2016
27133167Variation in Microbiome LPS Immunogenicity Contributes to Autoimmunity in Humans.Cell2016
27259157Variation in Microbiome LPS Immunogenicity Contributes to Autoimmunity in Humans.Cell2016
26311717Fusobacterium nucleatum in colorectal carcinoma tissue and patient prognosis.Gut2016
26181352Fusobacterium nucleatum and T Cells in Colorectal Carcinoma.JAMA Oncol2015
25662751The dynamics of the human infant gut microbiome in development and in progression toward type 1 diabetes.Cell Host Microbe2015
25974300An integrative view of microbiome-host interactions in inflammatory bowel diseases.Cell Host Microbe2015
24560869The microbiome in inflammatory bowel disease: current status and the future ahead.Gastroenterology2014
24950204Inflammatory bowel disease as a model for translating the microbiome.Immunity2014
24629344The treatment-naive microbiome in new-onset Crohn's disease.Cell Host Microbe2014
24586175Human genome-wide RNAi screen identifies an essential role for inositol pyrophosphates in Type-I interferon response.PLoS Pathog2014
24777677Microbes and inflammation in colorectal cancer.Cancer Immunol Res2013
23954159Fusobacterium nucleatum potentiates intestinal tumorigenesis and modulates the tumor-immune microenvironment.Cell Host Microbe2013
23924002Sequence-based discovery of Bradyrhizobium enterica in cord colitis syndrome.N Engl J Med2013
23592793Exploring host-microbiota interactions in animal models and humans.Genes and Development2013
23257362Prognostically relevant gene signatures of high-grade serous ovarian carcinoma.J Clin Invest2013
22009990Genomic analysis identifies association of Fusobacterium with colorectal carcinoma.Genome Res2012
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