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Author Details

Theodore Alexandrov
Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California
2008
88
34
PMIDPaper TitleJournal TitlePublished Year
37605803Enhancing metabolite coverage in MALDI-MSI using laser post-ionisation (MALDI-2).Anal Methods2023
36465564An optimized approach and inflation media for obtaining complimentary mass spectrometry-based omics data from human lung tissue.Front Mol Biosci2022
35708227Rapid and Automatic Annotation of Multiple On-Tissue Chemical Modifications in Mass Spectrometry Imaging with Metaspace.Anal Chem2022
35675394A reference tissue atlas for the human kidney.Sci Adv2022
34226721SpaceM reveals metabolic states of single cells.Nat Methods2021
33583182Adaptive Pixel Mass Recalibration for Mass Spectrometry Imaging Based on Locally Endogenous Biological Signals.Anal Chem2021
33529026Public LC-Orbitrap Tandem Mass Spectral Library for Metabolite Identification.J Proteome Res2021
34411119Quantification reveals early dynamics in Drosophila maternal gradients.PLoS One2021
34436418Facilitating Imaging Mass Spectrometry of Microbial Specialized Metabolites with METASPACE.Metabolites2021
34581565Rapid Automated Annotation and Analysis of N-Glycan Mass Spectrometry Imaging Data Sets Using NGlycDB in METASPACE.Anal Chem2021
34811546Single-cell proteo-genomic reference maps of the hematopoietic system enable the purification and massive profiling of precisely defined cell states.Nat Immunol2021
34414571Metabolic decisions in development and disease-a Keystone Symposia report.Ann N Y Acad Sci2021
34309190Single-cell transcriptomics reveals immune response of intestinal cell types to viral infection.Mol Syst Biol2021
32126772Response Surface Methodology As a New Approach for Finding Optimal MALDI Matrix Spraying Parameters for Mass Spectrometry Imaging.J Am Soc Mass Spectrom2020
34056560Spatial Metabolomics and Imaging Mass Spectrometry in the Age of Artificial Intelligence.Annu Rev Biomed Data Sci2020
31872957PySpacell: A Python Package for Spatial Analysis of Cell Images.Cytometry A2020
32049317ColocML: machine learning quantifies co-localization between mass spectrometry images.Bioinformatics2020
31925564DESI-MSI and METASPACE indicates lipid abnormalities and altered mitochondrial membrane components in diabetic renal proximal tubules.Metabolomics2020
32939051Modelling kidney disease using ontology: insights from the Kidney Precision Medicine Project.Nat Rev Nephrol2020
33022142DeepCycle reconstructs a cyclic cell cycle trajectory from unsegmented cell images using convolutional neural networks.Mol Syst Biol2020
32897710Storage Conditions of Human Kidney Tissue Sections Affect Spatial Lipidomics Analysis Reproducibility.J Am Soc Mass Spectrom2020
32839597Feature-based molecular networking in the GNPS analysis environment.Nat Methods2020
32245392OffsampleAI: artificial intelligence approach to recognize off-sample mass spectrometry images.BMC Bioinformatics2020
32299936Probing metabolism in time and space.Science2020
31551401Molecular and Microbial Microenvironments in Chronically Diseased Lungs Associated with Cystic Fibrosis.mSystems2019
292660993D molecular cartography using LC-MS facilitated by Optimus and 'ili software.Nat Protoc2018
30188119Data-Driven Rescoring of Metabolite Annotations Significantly Improves Sensitivity.Anal Chem2018
30117746Two-Exponential Models of Gene Expression Patterns for Noisy Experimental Data.J Comput Biol2018
29498278Bioactivity-Based Molecular Networking for the Discovery of Drug Leads in Natural Product Bioassay-Guided Fractionation.J Nat Prod2018
29487294Creating a 3D microbial and chemical snapshot of a human habitat.Sci Rep2018
29253079Curatr: a web application for creating, curating and sharing a mass spectral library.Bioinformatics2018
27594533Integration of 3D multimodal imaging data of a head and neck cancer and advanced feature recognition.Biochim Biophys Acta Proteins Proteom2017
28492366Digitizing mass spectrometry data to explore the chemical diversity and distribution of marine cyanobacteria and algae.Elife2017
29056429Three-Dimensional Microbiome and Metabolome Cartography of a Diseased Human Lung.Cell Host Microbe2017
29078340Meta-mass shift chemical profiling of metabolomes from coral reefs.Proc Natl Acad Sci U S A2017
28628333Coupling Targeted and Untargeted Mass Spectrometry for Metabolome-Microbiome-Wide Association Studies of Human Fecal Samples.Anal Chem2017
28591636N-acyl Taurines and Acylcarnitines Cause an Imbalance in Insulin Synthesis and Secretion Provoking β Cell Dysfunction in Type 2 Diabetes.Cell Metab2017
27842059FDR-controlled metabolite annotation for high-resolution imaging mass spectrometry.Nat Methods2017
27485623An approach to optimize sample preparation for MALDI imaging MS of FFPE sections using fractional factorial design of experiments.Anal Bioanal Chem2016
27849584Lifestyle chemistries from phones for individual profiling.Proc Natl Acad Sci U S A2016
27732780Mass Spectrometry-Based Visualization of Molecules Associated with Human Habitats.Anal Chem2016
27713918Data for spatial analysis of growth anomaly lesions on <i>Montipora capitata</i> coral colonies using 3D reconstruction techniques.Data Brief2016
28028548Spatial Molecular Architecture of the Microbial Community of a <i>Peltigera</i> Lichen.mSystems2016
27504778Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking.Nat Biotechnol2016
27555383Investigating the spatial distribution of growth anomalies affecting Montipora capitata corals in a 3-dimensional framework.J Invertebr Pathol2016
24942285Histomolecular interpretation of pleomorphic adenomas of the salivary gland by matrix-assisted laser desorption ionization imaging and spatial segmentation.Head Neck2015
26246193Molecular and chemical dialogues in bacteria-protozoa interactions.Sci Rep2015
26072506Using collective expert judgements to evaluate quality measures of mass spectrometry images.Bioinformatics2015
25825778Molecular cartography of the human skin surface in 3D.Proc Natl Acad Sci U S A2015
25941567Benchmark datasets for 3D MALDI- and DESI-imaging mass spectrometry.Gigascience2015
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Collaborators

Pieter C Dorrestein
Co-authored papers 23
Nuno Bandeira
University of California
Co-authored papers 9
Rob Knight
University of California
Co-authored papers 9
Neha Garg
Co-authored papers 8
Mingxun Wang
Co-authored papers 8
Christopher R Anderton
Pacific Northwest National Laboratory
Co-authored papers 7
Gail Ackermann
University of California San Diego
Co-authored papers 4
Vanessa V Phelan
Co-authored papers 3
Daniel Petras
Co-authored papers 3
Charles Pineau
French Institute of Health and Medical Research
Co-authored papers 3
Ian H de Boer
and the Kidney Research Institute, University of Washington
Co-authored papers 2
Jonathan Himmelfarb
Kidney Research Institute and Division of Nephrology, University of Washington
Co-authored papers 2
Gregory Humphrey
University of California
Co-authored papers 2
M Todd Valerius
Brigham and Women's Hospital, Harvard Medical School
Co-authored papers 2
Yoshiki V??zquez-Baeza
Center for Microbiome Innovation, University of California San Diego
Co-authored papers 2
Laura Barisoni
Duke University
Co-authored papers 2
Ljiljana Pa??a-Toli??
Pacific Northwest National Laboratory
Co-authored papers 2
Yongqun He
University of Michigan Medical School ann arbor
Co-authored papers 2
Ravi Iyengar
Department of Pharmacological Sciences, Icahn School of Medicine at Mount Sinai
Co-authored papers 2
Alexey Gurevich
Co-authored papers 2
Jens Hansen
Icahn School of Medicine at Mount Sinai
Co-authored papers 2
Matthias Kretzler
University of Michigan ann arbor
Co-authored papers 2
William H Gerwick
Scripps Institution of Oceanography, University of California San Diego
Co-authored papers 2
Pavel A Pevzner
University of California
Co-authored papers 2
Jennifer E Kyle
Pacific Northwest National Laboratory
Co-authored papers 2
Alan K Jarmusch
Co-authored papers 2
Sanjay Jain
Washington University School of Medicine
Co-authored papers 2
Tarek M El-Achkar
Co-authored papers 1
Lennart Martens
Co-authored papers 1
Markus Ralser
Charite - Universitatsmedizin Berlin
Co-authored papers 1
Release 1.2