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Author Details

Jasper Rine
University of California berkeley
1977
201
70
Nevan J Krogan (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36495285Limits to transcriptional silencing in Saccharomyces cerevisiae.Genetics2023
37645983Two-way feedback between chromatin compaction and histone modification state explains <i>S. cerevisiae</i> heterochromatin bistability.bioRxiv2023
37769255Context-dependent function of the transcriptional regulator Rap1 in gene silencing and activation in <i>Saccharomyces cerevisiae</i>.Proc Natl Acad Sci U S A2023
37214837Context dependent function of the transcriptional regulator Rap1 in gene silencing and activation in <i>Saccharomyces cerevisiae</i>.bioRxiv2023
35073254Distinguishing between recruitment and spread of silent chromatin structures in <i>Saccharomyces cerevisiae</i>.Elife2022
36041432Distinct silencer states generate epigenetic states of heterochromatin.Mol Cell2022
33713126A novel allele of SIR2 reveals a heritable intermediate state of gene silencing.Genetics2021
32687055S-phase-independent silencing establishment in <i>Saccharomyces cerevisiae</i>.Elife2020
32000841A proactive genotype-to-patient-phenotype map for cystathionine beta-synthase.Genome Med2020
33077593Nucleosome Positioning Regulates the Establishment, Stability, and Inheritance of Heterochromatin in <i>Saccharomyces cerevisiae</i>.Proc Natl Acad Sci U S A2020
31063268Accumulation of rare coding variants in genes implicated in risk of human cleft lip with or without cleft palate.Am J Med Genet A2019
31613222Epigenetic memory independent of symmetric histone inheritance.Elife2019
31301157Assessing computational predictions of the phenotypic effect of cystathionine-beta-synthase variants.Hum Mutat2019
31451562Mutations in the PCNA DNA Polymerase Clamp of Saccharomyces cerevisiae Reveal Complexities of the Cell Cycle and Ploidy on Heterochromatin Assembly.Genetics2019
31511420The nucleosome core particle remembers its position through DNA replication and RNA transcription.Proc Natl Acad Sci U S A2019
30870065Epigenomic profiling of newborns with isolated orofacial clefts reveals widespread DNA methylation changes and implicates metastable epiallele regions in disease risk.Epigenetics2019
29339409Impact of Homologous Recombination on Silent Chromatin in <i>Saccharomyces cerevisiae</i>.Genetics2018
29440488Pivotal roles of PCNA loading and unloading in heterochromatin function.Proc Natl Acad Sci U S A2018
28064165Nutritional Control of Chronological Aging and Heterochromatin in <i>Saccharomyces cerevisiae</i>.Genetics2017
28302853Aggregation of the Whi3 protein, not loss of heterochromatin, causes sterility in old yeast cells.Science2017
28346139Oncometabolite D-2-Hydroxyglutarate enhances gene silencing through inhibition of specific H3K36 histone demethylases.Elife2017
28609193DNA Methylome Profiling on the Infinium HumanMethylation450 Array from Limiting Quantities of Genomic DNA from a Single, Small Archived Bloodspot.Genet Test Mol Biomarkers2017
26811328Evolution and Functional Trajectory of Sir1 in Gene Silencing.Mol Cell Biol2016
27604992Sequence variation in folate pathway genes and risks of human cleft lip with or without cleft palate.Am J Med Genet A2016
27655944Donor Preference Meets Heterochromatin: Moonlighting Activities of a Recombinational Enhancer in Saccharomyces cerevisiae.Genetics2016
27140647Riches of phenotype computationally extracted from microbial colonies.Proc Natl Acad Sci U S A2016
27256881GENOME ENGINEERING. The Genome Project-Write.Science2016
27466318Sir protein-independent repair of dicentric chromosomes in Saccharomyces cerevisiae.Mol Biol Cell2016
27489001Histone Deacetylases with Antagonistic Roles in Saccharomyces cerevisiae Heterochromatin Formation.Genetics2016
25581000Heritable capture of heterochromatin dynamics in Saccharomyces cerevisiae.Elife2015
26359776Metabolism and epigenetics.Annu Rev Cell Dev Biol2015
26082137On the Mechanism of Gene Silencing in Saccharomyces cerevisiae.G3 (Bethesda)2015
26178966The State of Federal Research Funding in Genetics as Reflected by Members of the Genetics Society of America.Genetics2015
25823445The Chromatin and Transcriptional Landscape of Native Saccharomyces cerevisiae Telomeres and Subtelomeric Domains.Genetics2015
25406467Maintenance of nucleosomal balance in cis by conserved AAA-ATPase Yta7.Genetics2015
24493645The molecular topography of silenced chromatin in Saccharomyces cerevisiae.Genes Dev2014
24577733A future of the model organism model.Mol Biol Cell2014
24648496Multiple inputs control sulfur-containing amino acid synthesis in Saccharomyces cerevisiae.Mol Biol Cell2014
23979574Nutritional control of epigenetic processes in yeast and human cells.Genetics2013
24173036Highly expressed loci are vulnerable to misleading ChIP localization of multiple unrelated proteins.Proc Natl Acad Sci U S A2013
23934999Mono and dual cofactor dependence of human cystathionine β-synthase enzyme variants in vivo and in vitro.G3 (Bethesda)2013
22198837Two surfaces on the histone chaperone Rtt106 mediate histone binding, replication, and silencing.Proc Natl Acad Sci U S A2012
23275878The enigmatic conservation of a Rap1 binding site in the Saccharomyces cerevisiae HMR-E silencer.G3 (Bethesda)2012
22907759Direct interplay among histones, histone chaperones, and a chromatin boundary protein in the control of histone gene expression.Mol Cell Biol2012
22923378Evolutionary analysis of heterochromatin protein compatibility by interspecies complementation in Saccharomyces.Genetics2012
22267502Surrogate genetics and metabolic profiling for characterization of human disease alleles.Genetics2012
21262833Symmetry, asymmetry, and kinetics of silencing establishment in Saccharomyces cerevisiae revealed by single-cell optical assays.Proc Natl Acad Sci U S A2011
22384314The Awesome Power of Yeast Evolutionary Genetics: New Genome Sequences and Strain Resources for the Saccharomyces sensu stricto Genus.G3 (Bethesda)2011
22076362Competencies: a cure for pre-med curriculum.Science2011
22074782Direct regulation of nucleosome density by the conserved AAA-ATPase Yta7.Proc Natl Acad Sci U S A2011
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Collaborators

National Cancer Institute
Co-authored papers 9
Howard Hughes Medical Institute, The University of California berkeley
Co-authored papers 5
Howard Hughes Medical Institute, University of California Berkeley
Co-authored papers 4
University of California berkeley
Co-authored papers 4
University of British Columbia
Co-authored papers 4
University of California San Diego
Co-authored papers 4
University of Toronto, 1 King's College Circle
Co-authored papers 3
Baylor College of Medicine
Co-authored papers 3
University of California berkeley
Co-authored papers 3
University of California San Diego
Co-authored papers 2
Stanford University School of Medicine
Co-authored papers 2
University of California at San Francisco
Co-authored papers 2
University of Toronto
Co-authored papers 2
Lawrence Berkeley National Laboratory
Co-authored papers 2
University of California at Berkeley
Co-authored papers 2
Stanford University
Co-authored papers 2
University of Toronto
Co-authored papers 2
BC Children's Hospital Research Institute, University of British Columbia
Co-authored papers 2
College Street, University of Toronto
Co-authored papers 2
Columbia University Medical Center
Co-authored papers 2
ETH Zurich
Co-authored papers 2
Boston University School of Medicine, Boston University
Co-authored papers 2
University of Toronto
Co-authored papers 2
University of Utah
Co-authored papers 2
University of California San Francisco
Co-authored papers 2
Joan C. Edwards School of Medicine, Marshall University
Co-authored papers 1
Department of Pharmacy and Biotechnology, University of Bologna
Co-authored papers 1
Institute of Molecular Biology, University of Zurich
Co-authored papers 1
Broad Institute of MIT and Harvard
Co-authored papers 1
Buck Institute for Research on Aging
Co-authored papers 1