Author details

Full Name

Thomas D Tullius

Affiliation

ORCID

Career Start Year

1978

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
29390080	Experimental maps of DNA structure at nucleotide resolution distinguish intrinsic from protein-induced DNA deformations.	Nucleic Acids Research	2018
27401555	A microRNA program in the C. elegans hypodermis couples to intestinal mTORC2/PQM-1 signaling to modulate fat transport.	Genes and Development	2016
25326329	GBshape: a genome browser database for DNA shape annotations.	Nucleic Acids Res	2015
25164756	Comparative analysis of metazoan chromatin organization.	Nature	2014
25313156	Chemical probing of RNA with the hydroxyl radical at single-atom resolution.	Nucleic Acids Research	2014
21863498	A computational method to search for DNA structural motifs in functional genomic elements.	Methods Mol Biol	2011
21439813	DNA shape, genetic codes, and evolution.	Curr Opin Struct Biol	2011
21967305	A map of minor groove shape and electrostatic potential from hydroxyl radical cleavage patterns of DNA.	ACS Chem Biol	2011
19865161	Structural biology: DNA binding shapes up.	Nature	2009
19286520	Local DNA topography correlates with functional noncoding regions of the human genome.	Science	2009
18546600	Footprinting protein-DNA complexes using the hydroxyl radical.		2008
19425134	The relationship between fine scale DNA structure, GC content, and functional elements in 1% of the human genome.	Genome Inform	2008
17571346	Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.	Nature	2007
17568010	Construction of a genome-scale structural map at single-nucleotide resolution.	Genome Research	2007
17568009	Detection of DNA structural motifs in functional genomic elements.	Genome Res	2007
17650506	Effects of discontinuities in the DNA template on abortive initiation and promoter escape by Escherichia coli RNA polymerase.	Journal of Biological Chemistry	2007
16116097	Platinum anticancer drug damage enforces a particular rotational setting of DNA in nucleosomes.	Proceedings of the National Academy of Sciences of the United States of America	2005
15811796	Mapping nucleic acid structure by hydroxyl radical cleavage.	Current Opinion in Chemical Biology	2005
15539585	Research Corporation and John Schaefer.	Science	2004
12644712	Gapped DNA is anisotropically bent.	Proceedings of the National Academy of Sciences of the United States of America	2003
12419257	Interchange of DNA-binding modes in the deformed and ultrabithorax homeodomains: a structural role for the N-terminal arm.	Journal of Molecular Biology	2002
18428898	Probing DNA structure with hydroxyl radicals.	Current Protocols in Nucleic Acid Chemistry	2002
12372509	A general synthesis of specifically deuterated nucleotides for studies of DNA and RNA.	Bioorganic and Medicinal Chemistry Letters	2002
10702248	The roles of specific template nucleosides in the formation of stable transcription complexes by Escherichia coli RNA polymerase.	Journal of Biological Chemistry	2000
10480908	The yeast transcription factor Mac1 binds to DNA in a modular fashion.	Journal of Biological Chemistry	1999
10542209	Nucleosome structural features and intrinsic properties of the TATAAACGCC repeat sequence.	Journal of Biological Chemistry	1999
11848926	Oxidative Strand Scission of Nucleic Acids: Routes Initiated by Hydrogen Abstraction from the Sugar Moiety.	Chemical Reviews	1998
9707545	DNA strand breaking by the hydroxyl radical is governed by the accessible surface areas of the hydrogen atoms of the DNA backbone.	Proceedings of the National Academy of Sciences of the United States of America	1998
9551094	The DNA binding specificity of engrailed homeodomain.	Journal of Molecular Biology	1998
9016637	Quantitative analysis of electrophoresis data: novel curve fitting methodology and its application to the determination of a protein-DNA binding constant.	Nucleic Acids Research	1997
9368756	The solution structure of the amino-terminal HHCC domain of HIV-2 integrase: a three-helix bundle stabilized by zinc.	Curr Biol	1997
8742852	Targeting of nucleic acids by iron complexes.	Metal Ions in Biological Systems	1996
8901514	Effect of the crystallizing agent 2-methyl-2,4-pentanediol on the structure of adenine tract DNA in solution.	Biochemistry	1996
7623378	Homeodomain proteins: what governs their ability to recognize specific DNA sequences?	Journal of Molecular Biology	1995
7659525	Chemical probe and missing nucleoside analysis of Flp recombinase bound to the recombination target sequence.	Nucleic Acids Research	1995
7696253	Cleavage by calicheamicin gamma 1I of DNA in a nucleosome formed on the 5S RNA gene of Xenopus borealis.	Biochemistry	1995
8591025	Homeodomains: together again for the first time.	Structure	1995
8286393	Hydroxyl radical footprinting of calicheamicin. Relationship of DNA binding to cleavage.	Biochemistry	1994
8380329	How the structure of an adenine tract depends on sequence context: a new model for the structure of TnAn DNA sequences.	Biochemistry	1993
8383529	Structure of DNA in a nucleosome core at high salt concentration and at high temperature.	Biochemistry	1993
8490015	Sequence-specific cleavage of DNA via nucleophilic attack of hydrogen peroxide, assisted by Flp recombinase.	Biochemistry	1993
1404361	Structure of the TFIIIA-5 S DNA complex.	Journal of Molecular Biology	1992
1325598	Using hydroxyl radical to probe DNA structure.	Methods in Enzymology	1992
1706345	Bioinorganic chemistry.	Journal of Cellular Biochemistry	1991
1664026	Hydroxyl radical footprinting.	Methods in Enzymology	1991
1653013	The histone core exerts a dominant constraint on the structure of DNA in a nucleosome.	Biochemistry	1991
1648010	DNA footprinting with the hydroxyl radical.		1991
1696501	Detection of drug binding to DNA by hydroxyl radical footprinting. Relationship of distamycin binding sites to DNA structure and positioned nucleosomes on 5S RNA genes of Xenopus.	Biochemistry	1990
2176888	Asymmetric structure of a three-arm DNA junction.	Biochemistry	1990
2172714	Footprinting protein-DNA complexes with gamma-rays.	Methods in Enzymology	1990