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Author Details

James A Coffman
University of Maine
1984
59
23
PMIDPaper TitleJournal TitlePublished Year
37507475Loss of Krüppel-like factor 9 deregulates both physiological gene expression and development.Sci Rep2023
35493082Editorial: Early Life Stress and Developmental Programming of Immune and Nervous System Responsivity.Front Cell Dev Biol2022
34692682Glucocorticoid-Responsive Transcription Factor Krüppel-Like Factor 9 Regulates fkbp5 and Metabolism.Front Cell Dev Biol2021
34992551Glucocorticoid-Mediated Developmental Programming of Vertebrate Stress Responsivity.Front Physiol2021
32651405Klf9 is a key feedforward regulator of the transcriptomic response to glucocorticoid receptor activity.Sci Rep2020
32746894Chronic cortisol exposure in early development leads to neuroendocrine dysregulation in adulthood.BMC Res Notes2020
31302472Redox regulation of development and regeneration.Curr Opin Genet Dev2019
28693618Simple and fast quantification of DNA damage by real-time PCR, and its application to nuclear and mitochondrial DNA from multiple tissues of aging zebrafish.BMC Res Notes2017
27095483Maintenance of somatic tissue regeneration with age in short- and long-lived species of sea urchins.Aging Cell2016
27235147An Elk transcription factor is required for Runx-dependent survival signaling in the sea urchin embryo.Dev Biol2016
27444789Cortisol-treated zebrafish embryos develop into pro-inflammatory adults with aberrant immune gene regulation.Biol Open2016
26173445Developmental control of transcriptional and proliferative potency during the evolutionary emergence of animals.Dev Dyn2015
26124444Gene Expression Changes Associated With the Developmental Plasticity of Sea Urchin Larvae in Response to Food Availability.Biol Bull2015
24384388Oral-aboral axis specification in the sea urchin embryo, IV: hypoxia radializes embryos by preventing the initial spatialization of nodal activity.Dev Biol2014
25870720On the meaning of chance in biology.Biosemiotics2014
23789095Sea urchin akt activity is Runx-dependent and required for post-cleavage stage cell division.Biol Open2013
24090975Developmental cis-regulatory analysis of the cyclin D gene in the sea urchin Strongylocentrotus purpuratus.Biochem Biophys Res Commun2013
21254277Oxygen, pH, and oral-aboral axis specification in the sea urchin embryo.Mol Reprod Dev2011
21337468Nodal-mediated epigenesis requires dynamin-mediated endocytosis.Dev Dyn2011
19328778Oral-aboral axis specification in the sea urchin embryo III. Role of mitochondrial redox signaling via H2O2.Dev Biol2009
19374764The evolution of Runx genes II. The C-terminal Groucho recruitment motif is present in both eumetazoans and homoscleromorphs but absent in a haplosclerid demosponge.BMC Res Notes2009
19429498Mitochondria and metazoan epigenesis.Semin Cell Dev Biol2009
19429497Mitochondrial patterns and function in animal development.Semin Cell Dev Biol2009
19330799Is Runx a linchpin for developmental signaling in metazoans?J Cell Biochem2009
19020668Runx expression is mitogenic and mutually linked to Wnt activity in blastula-stage sea urchin embryos.PLoS One2008
17451671Cis-regulatory control of the nodal gene, initiator of the sea urchin oral ectoderm gene network.Dev Biol2007
17586486Mitochondria, redox signaling and axis specification in metazoan embryos.Dev Biol2007
16469111CBFbeta is a facultative Runx partner in the sea urchin embryo.BMC Biol2006
17078944The genomic repertoire for cell cycle control and DNA metabolism in S. purpuratus.Dev Biol2006
17010332The genomic underpinnings of apoptosis in Strongylocentrotus purpuratus.Dev Biol2006
17095691The genome of the sea urchin Strongylocentrotus purpuratus.Science2006
17027740The sea urchin kinome: a first look.Dev Biol2006
17087928Protein tyrosine and serine-threonine phosphatases in the sea urchin, Strongylocentrotus purpuratus: identification and potential functions.Dev Biol2006
15770679On reductionism, organicism, somatic mutations and cancer.Bioessays2005
16076398Runx-dependent expression of PKC is critical for cell survival in the sea urchin embryo.BMC Biol2005
15710043Sea urchin vault structure, composition, and differential localization during development.BMC Dev Biol2005
15132741Evaluation of developmental phenotypes produced by morpholino antisense targeting of a sea urchin Runx gene.BMC Biol2004
15575625Identification of sequence-specific DNA binding proteins.Methods Cell Biol2004
15302605Oral-aboral axis specification in the sea urchin embryo II. Mitochondrial distribution and redox state contribute to establishing polarity in Strongylocentrotus purpuratus.Dev Biol2004
14762208The sea urchin stem-loop-binding protein: a maternally expressed protein that probably functions in expression of multiple classes of histone mRNA.Nucleic Acids Res2004
15030756Cell cycle development.Dev Cell2004
12788047Runx transcription factors and the developmental balance between cell proliferation and differentiation.Cell Biol Int2003
12659662The evolution of Runx genes I. A comparative study of sequences from phylogenetically diverse model organisms.BMC Evol Biol2003
12204279The expression of SpRunt during sea urchin embryogenesis.Mech Dev2002
11161559Oral-aboral axis specification in the sea urchin embryo. I. Axis entrainment by respiratory asymmetry.Dev Biol2001
10791300Large-scale culture and preparation of sea urchin embryos for isolation of transcriptional regulatory proteins.Methods Mol Biol2000
9428408SpMyb functions as an intramodular repressor to regulate spatial expression of CyIIIa in sea urchin embryos.Development1997
9200833Extensive maternal representation of DNA-binding proteins that interact with regulatory target sites of the Strongylocentrotus purpuratus CyIIIa gene.Mol Mar Biol Biotechnol1997
9324412Covalent variation is a general property of transcription factors in the sea urchin embryo.Mol Mar Biol Biotechnol1997
8626020SpRunt-1, a new member of the runt domain family of transcription factors, is a positive regulator of the aboral ectoderm-specific CyIIIA gene in sea urchin embryos.Dev Biol1996
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Collaborators

Present address: King Abdullah University of Science and Technology
Co-authored papers 19
California Institute of Technology
Co-authored papers 12
Duke University
Co-authored papers 6
Boston University
Co-authored papers 3
University of Salerno and Genome Research Center for Health
Co-authored papers 3
CTO Hospital
Co-authored papers 3
Sorbonne Universite, CNRS
Co-authored papers 3
Novartis Institutes for Biomedical Research
Co-authored papers 3
University of North Carolina at Chapel Hill
Co-authored papers 3
Co-authored papers 3
Institute of Cellular and Organismic Biology
Co-authored papers 3
CNRS, Sorbonne Universite
Co-authored papers 3
National Science Foundation
Co-authored papers 3
Institut Biology Valrose, Universite Cote d'Azur
Co-authored papers 2
Center for Phenomic Health, The Buck Institute for Research on Aging
Co-authored papers 2
University of Montana
Co-authored papers 2
Center for Computational & Integrative Biology, The State University of New Jersey
Co-authored papers 2
Universite Cote d'Azur, CNRS, Inserm
Co-authored papers 2
Duke University
Co-authored papers 2
St. Petersburg College
Co-authored papers 2
University of Delhi South Campus
Co-authored papers 2
Universite Paris Cite, CNRS
Co-authored papers 2
California Polytechnic State University
Co-authored papers 2
Duke University Medical Center
Co-authored papers 2
Sorbonne Universites, France CNRS
Co-authored papers 2
Sorbonne Universite, CNRS
Co-authored papers 2
Cellular and Developmental Biology and Marine Science Institute
Co-authored papers 2
College of Charleston
Co-authored papers 2
Sorbonne Universite, CNRS
Co-authored papers 2
University of New Orleans
Co-authored papers 2