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Author Details

Eric E Allen
1999
87
38
PMIDPaper TitleJournal TitlePublished Year
36802428Terpene biosynthesis in marine sponge animals.2023
38076955Enrichable consortia of microbial symbionts degrade macroalgal polysaccharides in fish.2023
37133385Herbivorous Fish Microbiome Adaptations to Sulfated Dietary Polysaccharides.2023
35306867Microbiomes of Hadal Fishes across Trench Habitats Contain Similar Taxa and Known Piezophiles.mSphere2022
36108739The Natural Product Domain Seeker version 2 (NaPDoS2) webtool relates ketosynthase phylogeny to biosynthetic function.Journal of Biological Chemistry2022
35834446Phenotypic and transcriptional response of Daphnia pulicaria to the combined effects of temperature and predation.PLoS ONE2022
35606844Fine scale transitions of the microbiota and metabolome along the gastrointestinal tract of herbivorous fishes.2022
35536036Variation in Survival and Gut Microbiome Composition of Hatchery-Grown Native Oysters at Various Locations within the Puget Sound.Microbiology spectrum2022
36396943Host biology, ecology and the environment influence microbial biomass and diversity in 101 marine fish species.Nat Commun2022
34862327Defining and quantifying the core microbiome: Challenges and prospects.Proceedings of the National Academy of Sciences of the United States of America2021
36248701Impacts of the Marine Hatchery Built Environment, Water and Feed on Mucosal Microbiome Colonization Across Ontogeny in Yellowtail Kingfish, <i>Seriola lalandi</i>.Front Mar Sci2021
33482920Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment.Microbiome2021
33460888Non-targeted tandem mass spectrometry enables the visualization of organic matter chemotype shifts in coastal seawater.2021
33837011Genetic Suppression of Lethal Mutations in Fatty Acid Biosynthesis Mediated by a Secondary Lipid Synthase.Applied and Environmental Microbiology2021
34341414Diploid genomic architecture of Nitzschia inconspicua, an elite biomass production diatom.Scientific Reports2021
33432685Decade-scale stability and change in a marine bivalve microbiome.Molecular Ecology2021
32839765Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment.Res Sq2020
32434844Temporal, Environmental, and Biological Drivers of the Mucosal Microbiome in a Wild Marine Fish, Scomber japonicus.mSphere2020
32303543Microbial Ecology of Atlantic Salmon (Salmo salar) Hatcheries: Impacts of the Built Environment on Fish Mucosal Microbiota.Appl Environ Microbiol2020
32391521Visualizing 'omic feature rankings and log-ratios using Qurro.NAR Genom Bioinform2020
32092934Multi-Omic Profiling of Sponges Reveals Diverse Metabolomic and Microbiome Architectures that Are Non-overlapping with Ecological Neighbors.Marine Drugs2020
32983024The Southern Bluefin Tuna Mucosal Microbiome Is Influenced by Husbandry Method, Net Pen Location, and Anti-parasite Treatment.Front Microbiol2020
32578266Sierra Nevada mountain lake microbial communities are structured by temperature, resources and geographic location.Molecular Ecology2020
32576248A genomic view of trophic and metabolic diversity in clade-specific Lamellodysidea sponge microbiomes.Microbiome2020
32513681Genetic regulation of the bacterial omega-3 polyunsaturated fatty acid biosynthesis pathway.Journal of Bacteriology2020
30930856Microbial Community Diversity Within Sediments from Two Geographically Separated Hadal Trenches.Frontiers in Microbiology2019
30291328Pangenomic comparison of globally distributed Poribacteria associated with sponge hosts and marine particles.ISME Journal2019
31088928Comparative Genomics of Cyanobacterial Symbionts Reveals Distinct, Specialized Metabolism in Tropical Sponges.mBio2019
31024488Linkage of Marine Bacterial Polyunsaturated Fatty Acid and Long-Chain Hydrocarbon Biosynthesis.Frontiers in Microbiology2019
30834681Diversity and composition of intertidal gastropod microbiomes across a major marine biogeographic boundary.Environmental Microbiology Reports2019
31320727Diel transcriptional response of a California Current plankton microbiome to light, low iron, and enduring viral infection.ISME J2019
29575531Metabolic potential and in situ transcriptomic profiles of previously uncharacterized key microbial groups involved in coupled carbon, nitrogen and sulfur cycling in anoxic marine zones.Environmental Microbiology2018
30168288Microbial effects of livestock manure fertilization on freshwater aquaculture ponds rearing tilapia (Oreochromis shiranus) and North African catfish (Clarias gariepinus).Microbiologyopen2018
29884827Bacterioplankton drawdown of coral mass-spawned organic matter.ISME Journal2018
30154761Distinctive Archaeal Composition of an Artisanal Crystallizer Pond and Functional Insights Into Salt-Saturated Hypersaline Environment Adaptation.Frontiers in Microbiology2018
29909829Characterization and Application of Marine Microbial Omega-3 Polyunsaturated Fatty Acid Synthesis.Methods in Enzymology2018
30417111High-Throughput Miniaturized 16S rRNA Amplicon Library Preparation Reduces Costs while Preserving Microbiome Integrity.mSystems2018
29621268Vertically distinct microbial communities in the Mariana and Kermadec trenches.PLoS ONE2018
29577086KatharoSeq Enables High-Throughput Microbiome Analysis from Low-Biomass Samples.mSystems2018
27935586Use of plankton-derived vitamin B1 precursors, especially thiazole-related precursor, by key marine picoeukaryotic phytoplankton.ISME Journal2017
28319100Metagenomic discovery of polybrominated diphenyl ether biosynthesis by marine sponges.Nature Chemical Biology2017
28265051Comparative genomics uncovers the prolific and distinctive metabolic potential of the cyanobacterial genus <i>Moorea</i>.Proc Natl Acad Sci U S A2017
28119683Fatty Acid Biosynthesis Pathways in .Frontiers in Microbiology2016
27933100Genome and methylome of the oleaginous diatom reveal genetic flexibility toward a high lipid phenotype.Biotechnology for Biofuels2016
27563040Complete Genome Sequence of a Cylindrospermopsin-Producing Cyanobacterium, Cylindrospermopsis raciborskii CS505, Containing a Circular Chromosome and a Single Extrachromosomal Element.Genome Announcements2016
25918833Metagenomic and lipid analyses reveal a diel cycle in a hypersaline microbial ecosystem.ISME J2015
25709557De novo sequences of Haloquadratum walsbyi from Lake Tyrrell, Australia, reveal a variable genomic landscape.Archaea2015
24959919The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing.PLoS Biol2014
25395641Metagenome sequencing of the microbial community of a solar saltern crystallizer pond at cáhuil lagoon, chile.Genome Announcements2014
25610434Adaptive laboratory evolution of Escherichia coli K-12 MG1655 for growth at high hydrostatic pressure.Frontiers in Microbiology2014
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