Author details

Full Name

Nicolas Bertin

Affiliation

University Bordeaux, CNRS

ORCID

Career Start Year

1994

Papers

H Index

Expertise

CM4AI Collaborator

Trey Ideker (CM4AI)

PMID	Paper Title	Journal Title	Published Year
36671126	Numerical simulation of universal morphogenesis of fluid interface deformations driven by radiation pressure.	Phys Rev E	2022
33020613	Atomistic insights into metal hardening.	Nat Mater	2021
32161175	Comprehensive Characterization of Transcriptional Activity during Influenza A Virus Infection Reveals Biases in Cap-Snatching of Host RNA Sequences.	J Virol	2020
30525680	Strengthening Mechanism of a Single Precipitate in a Metallic Nanocube.	Nano Lett	2019
30192605	Dislocation Networks and the Microstructural Origin of Strain Hardening.	Phys Rev Lett	2018
28526829	Super-Enhancers and Broad H3K4me3 Domains Form Complex Gene Regulatory Circuits Involving Chromatin Interactions.	Sci Rep	2017
28374878	Bubble-based acoustic micropropulsors: active surfaces and mixers.	Lab Chip	2017
28241135	An atlas of human long non-coding RNAs with accurate 5' ends.	Nature	2017
28972578	Linking FANTOM5 CAGE peaks to annotations with CAGEscan.	Sci Data	2017
28829439	An integrated expression atlas of miRNAs and their promoters in human and mouse.	Nat Biotechnol	2017
25723102	Gateways to the FANTOM5 promoter level mammalian expression atlas.	Genome Biol	2015
26594381	A resource of ribosomal RNA-depleted RNA-Seq data from different normal adult and fetal human tissues.	Sci Data	2015
25678556	Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells.	Science	2015
24727769	Interactive visualization and analysis of large-scale sequencing datasets using ZENBU.	Nat Biotechnol	2014
25539566	CAGE-defined promoter regions of the genes implicated in Rett Syndrome.	BMC Genomics	2014
24777452	Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance.	Nat Genet	2014
24904046	Digital expression profiling of the compartmentalized translatome of Purkinje neurons.	Genome Res	2014
24600346	NanoCAGE analysis of the mouse olfactory epithelium identifies the expression of vomeronasal receptors and of proximal LINE elements.	Front Cell Neurosci	2014
24670763	An atlas of active enhancers across human cell types and tissues.	Nature	2014
24670764	A promoter-level mammalian expression atlas.	Nature	2014
24703491	Transcriptional profiling of the human fibrillin/LTBP gene family, key regulators of mesenchymal cell functions.	Mol Genet Metab	2014
22194471	Promoter architecture of mouse olfactory receptor genes.	Genome Res	2012
23368327	Universal morphologies of fluid interfaces deformed by the radiation pressure of acoustic or electromagnetic waves.	Phys Rev Lett	2012
21596820	Unamplified cap analysis of gene expression on a single-molecule sequencer.	Genome Res	2011
20211142	An atlas of combinatorial transcriptional regulation in mouse and man.	Cell	2010
21230978	Liquid-column sustainment driven by acoustic wave guiding.	Phys Rev Lett	2010
20543846	Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan.	Nat Methods	2010
19123269	Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network.	Nat Methods	2009
19717439	Unexpected expression of alpha- and beta-globin in mesencephalic dopaminergic neurons and glial cells.	Proc Natl Acad Sci U S A	2009
19772597	Development of a high-throughput method for the systematic identification of human proteins nuclear translocation potential.	BMC Cell Biol	2009
19377474	The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.	Nat Genet	2009
17486083	Genome-scale analysis of in vivo spatiotemporal promoter activity in Caenorhabditis elegans.	Nat Biotechnol	2007
17922014	Network modeling links breast cancer susceptibility and centrosome dysfunction.	Nat Genet	2007
17564493	Confirmation of organized modularity in the yeast interactome.	PLoS Biol	2007
15790806	Functional genomic analysis of RNA interference in C. elegans.	Science	2005
16094371	Predictive models of molecular machines involved in Caenorhabditis elegans early embryogenesis.	Nature	2005
16003372	Effect of sampling on topology predictions of protein-protein interaction networks.	Nat Biotechnol	2005
14992718	Systematic interactome mapping and genetic perturbation analysis of a C. elegans TGF-beta signaling network.	Mol Cell	2004
15190252	Evidence for dynamically organized modularity in the yeast protein-protein interaction network.	Nature	2004
15173116	Annotation transfer between genomes: protein-protein interologs and protein-DNA regulogs.	Genome Res	2004
15489343	Generation of the Brucella melitensis ORFeome version 1.1.	Genome Res	2004
15489335	Human ORFeome version 1.1: a platform for reverse proteomics.	Genome Res	2004
14704431	A map of the interactome network of the metazoan C. elegans.	Science	2004
12679813	C. elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression.	Nat Genet	2003
12445390	Integrating interactome, phenome, and transcriptome mapping data for the C. elegans germline.	Curr Biol	2002
9012463	Thrombospondin-1 and -2 messenger RNA expression in normal, benign, and neoplastic human breast tissues: correlation with prognostic factors, tumor angiogenesis, and fibroblastic desmoplasia.	Cancer Res	1997
9137475	Fatty acid composition and CD36 expression in breast adipose tissue of premenopausal and postmenopausal women.	Anticancer Res	1997
7520877	Localization of thrombospondin, CD36 and CD51 during prenatal development of the human mammary gland.	Differentiation	1994

1 - 48 of 48

Vera Pancaldi

Universite de Toulouse, Inserm, CNRS, Universite Toulouse III-Paul Sabatier

Career Start Year 2009

Number of shared co-authors 3

Jonathan E Bard

University at Buffalo

Career Start Year 2007

Number of shared co-authors 1

Joshua W K Ho

The University of Hong Kong

Career Start Year 2006

Number of shared co-authors 0

Kun Qu

University of Science and Technology of China

Career Start Year 2005

Number of shared co-authors 2

Stephen A Ramsey

Oregon State University

Career Start Year 2004

Number of shared co-authors 1

Sean R Collins

University of California davis

Career Start Year 2003

Number of shared co-authors 4

Mikael Huss

Stockholm University

Career Start Year 2003

Number of shared co-authors 4

Ilya Shmulevich

Institute for Systems Biology

Career Start Year 2001

Number of shared co-authors 3

Stefan Bekiranov

University of Virginia

Career Start Year 2000

Number of shared co-authors 1

John Aach

Harvard Medical School

Career Start Year 2000

Number of shared co-authors 2

Roland Eils

Berlin Institute of Health (BIH) and Charite

Career Start Year 1995

Number of shared co-authors 9

Wolfgang Huber

Technische Universitat Munchen

Career Start Year 1995

Number of shared co-authors 10

Ron Shamir

Tel Aviv University

Career Start Year 1995

Number of shared co-authors 1

Sheng Zhong

Peking-Tsinghua Center for Life Sciences, College of Life Sciences, Peking University

Career Start Year 1994

Number of shared co-authors 5

Ioannis Xenarios

University of Lausanne

Career Start Year 1994

Number of shared co-authors 13

Joel S Bader

Johns Hopkins University

Career Start Year 1993

Number of shared co-authors 6

Bianca Habermann

Aix Marseille University, CNRS, Turing Center for Living Systems

Career Start Year 1993

Number of shared co-authors 2

Timothy R Hughes

University of Toronto

Career Start Year 1992

Number of shared co-authors 9

Fabian J Theis

Technical University of Munich

Career Start Year 1992

Number of shared co-authors 7

Andreas Beyer

University of Cologne

Career Start Year 1991

Number of shared co-authors 2

Wing Hung Wong

Stanford University

Career Start Year 1991

Number of shared co-authors 3

Janos Demeter

Stanford University School of Medicine, Center for Clinical Sciences Research

Career Start Year 1991

Number of shared co-authors 1

Frank C P Holstege

Princess Maxima Center for Pediatric Oncology

Career Start Year 1990

Number of shared co-authors 6

Gustavo Stolovitzky

IBM T.J. Watson Research Center

Career Start Year 1990

Number of shared co-authors 9

Shankar Subramaniam

University of California

Career Start Year 1989

Number of shared co-authors 1

Aviv Regev

Broad Institute of MIT and Harvard

Career Start Year 1987

Number of shared co-authors 21

Roderick V Jensen

Virginia Tech

Career Start Year 1985

Number of shared co-authors 3

Yuval Kluger

Yale University School of Medicine

Career Start Year 1984

Number of shared co-authors 4

Marian J A Groot Koerkamp

Princess Maxima Center for Pediatric Oncology Research

Career Start Year 1983

Number of shared co-authors 1

Itai Yanai

Institute for Systems Genetics NYU Grossman School of Medicine

Career Start Year 1977

Number of shared co-authors 0

row(s) 1 - 30 of 30

Piero Carninci

RIKEN Center for Integrative Medical Sciences

Co-authored papers 18

Yoshihide Hayashizaki

Center for Integrative Medical Sciences

Co-authored papers 16

Alistair R R Forrest

RIKEN Center for Integrative Medical Sciences

Co-authored papers 15

Marc Vidal

Blavatnik Institute, Harvard Medical School

Co-authored papers 15

Carsten O Daub

International Institute of Molecular and Cell Biology in Warsaw

Co-authored papers 13

Timo Lassmann

Telethon Kids Institute, University of Western Australia

Co-authored papers 13

Hideya Kawaji

RIKEN Center for Integrative Medical Sciences

Co-authored papers 13

Jessica Severin

Center for Integrative Medical Sciences

Co-authored papers 11

Albin Sandelin

University of Copenhagen

Co-authored papers 9

Jun Kawai

RIKEN Center for Integrative Medical Sciences

Co-authored papers 9

Marina Lizio

Cerevance Ltd

Co-authored papers 8

Charles Plessy

Okinawa Institute of Science and Technology

Co-authored papers 8

Dave S B Hoon

Saint John's Cancer Institute at Saint John's Health Center

Co-authored papers 8

Harukazu Suzuki

RIKEN Center for Integrative Medical Sciences

Co-authored papers 8

Dong Han

Beijing University of Chinese Medicine

Co-authored papers 7

Erik Arner

RIKEN Center for Integrative Medical Sciences (IMS)

Co-authored papers 7

Robin Andersson

University of Copenhagen

Co-authored papers 6

Shiro Fukuda

Graduate School of Medicine, Osaka University

Co-authored papers 6

John Kenneth Baillie

Roslin Institute, University of Edinburgh

Co-authored papers 6

Frederick P Roth

University of Toronto

Co-authored papers 6

Masayoshi Itoh

RIKEN Center for Integrative Medical Sciences

Co-authored papers 6

Takeya Kasukawa

RIKEN Center for Integrative Medical Sciences

Co-authored papers 6

Jayson Harshbarger

RIKEN Center for Integrative Medical Sciences

Co-authored papers 6

David A Hume

Mater Research Institute-UQ, Translational Research Institute

Co-authored papers 6

Noriko Ninomiya

Japan Tobacco Inc.

Co-authored papers 5

Geoffrey J Faulkner

Mater Research Institute - University of Queensland

Co-authored papers 5

Akira Hasegawa

RIKEN Center for Integrative Medical Sciences

Co-authored papers 5

Kristin C Gunsalus

Center for Genomics and Systems Biology, New York University Abu Dhabi (NYUAD)

Co-authored papers 5

Peter Heutink

German Center for Neurodegenerative Diseases (DZNE).

Co-authored papers 5

Stefano Gustincich

Istituto Italiano di Tecnologia

Co-authored papers 5

1 - 30

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