Author details

Full Name

Simon Prochnik

Affiliation

Joint Genome Institute

ORCID

Career Start Year

1996

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
28716924	Insights into the red algae and eukaryotic evolution from the genome of <i>Porphyra umbilicalis</i> (Bangiophyceae, Rhodophyta).	Proc Natl Acad Sci U S A	2017
28716924	Insights into the red algae and eukaryotic evolution from the genome of <i>Porphyra umbilicalis</i> (Bangiophyceae, Rhodophyta).	Proc Natl Acad Sci U S A	2017
29074648	Draft Nuclear Genome Sequence of the Halophilic and Beta-Carotene-Accumulating Green Alga <i>Dunaliella salina</i> Strain CCAP19/18.	Genome Announc	2017
29074648	Draft Nuclear Genome Sequence of the Halophilic and Beta-Carotene-Accumulating Green Alga <i>Dunaliella salina</i> Strain CCAP19/18.	Genome Announc	2017
27088722	Sequencing wild and cultivated cassava and related species reveals extensive interspecific hybridization and genetic diversity.	Nat Biotechnol	2016
27015628	Genome Analysis of Planctomycetes Inhabiting Blades of the Red Alga Porphyra umbilicalis.	PLoS One	2016
27088722	Sequencing wild and cultivated cassava and related species reveals extensive interspecific hybridization and genetic diversity.	Nat Biotechnol	2016
27015628	Genome Analysis of Planctomycetes Inhabiting Blades of the Red Alga Porphyra umbilicalis.	PLoS One	2016
25948536	Identification and distribution of the NBS-LRR gene family in the Cassava genome.	BMC Genomics	2015
25948536	Identification and distribution of the NBS-LRR gene family in the Cassava genome.	BMC Genomics	2015
24908277	Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication.	Nat Biotechnol	2014
24950814	The Chlamydomonas genome project: a decade on.	Trends Plant Sci	2014
24908277	Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication.	Nat Biotechnol	2014
24950814	The Chlamydomonas genome project: a decade on.	Trends Plant Sci	2014
23518688	The Reference Genome of the Halophytic Plant Eutrema salsugineum.	Front Plant Sci	2013
23749190	The Capsella rubella genome and the genomic consequences of rapid mating system evolution.	Nat Genet	2013
23525075	The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution.	Nat Genet	2013
23518688	The Reference Genome of the Halophytic Plant Eutrema salsugineum.	Front Plant Sci	2013
23749190	The Capsella rubella genome and the genomic consequences of rapid mating system evolution.	Nat Genet	2013
23525075	The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution.	Nat Genet	2013
22337920	Analysis of Porphyra membrane transporters demonstrates gene transfer among photosynthetic eukaryotes and numerous sodium-coupled transport systems.	Plant Physiol	2012
27009986	Porphyra (Bangiophyceae) Transcriptomes Provide Insights Into Red Algal Development And Metabolism.	J Phycol	2012
27008999	MAJOR DEVELOPMENTAL REGULATORS AND THEIR EXPRESSION IN TWO CLOSELY RELATED SPECIES OF PORPHYRA (RHODOPHYTA)(1).	J Phycol	2012
22337920	Analysis of Porphyra membrane transporters demonstrates gene transfer among photosynthetic eukaryotes and numerous sodium-coupled transport systems.	Plant Physiol	2012
22523606	The Cassava Genome: Current Progress, Future Directions.	Trop Plant Biol	2012
27009986	Porphyra (Bangiophyceae) Transcriptomes Provide Insights Into Red Algal Development And Metabolism.	J Phycol	2012
27008999	MAJOR DEVELOPMENTAL REGULATORS AND THEIR EXPRESSION IN TWO CLOSELY RELATED SPECIES OF PORPHYRA (RHODOPHYTA)(1).	J Phycol	2012
22523606	The Cassava Genome: Current Progress, Future Directions.	Trop Plant Biol	2012
21515685	The GreenCut2 resource, a phylogenomically derived inventory of proteins specific to the plant lineage.	J Biol Chem	2011
21515685	The GreenCut2 resource, a phylogenomically derived inventory of proteins specific to the plant lineage.	J Biol Chem	2011
20395508	Evolution of an expanded sex-determining locus in Volvox.	Science	2010
20395508	Evolution of an expanded sex-determining locus in Volvox.	Science	2010
20616280	Genomic analysis of organismal complexity in the multicellular green alga Volvox carteri.	Science	2010
20211133	The genome of Naegleria gruberi illuminates early eukaryotic versatility.	Cell	2010
20228792	The dynamic genome of Hydra.	Nature	2010
20616280	Genomic analysis of organismal complexity in the multicellular green alga Volvox carteri.	Science	2010
20211133	The genome of Naegleria gruberi illuminates early eukaryotic versatility.	Cell	2010
20228792	The dynamic genome of Hydra.	Nature	2010
17103184	Evidence for a microRNA expansion in the bilaterian ancestor.	Dev Genes Evol	2007
17932292	The Chlamydomonas genome reveals the evolution of key animal and plant functions.	Science	2007
17392514	Novel sfi1 alleles uncover additional functions for Sfi1p in bipolar spindle assembly and function.	Mol Biol Cell	2007
17291820	Novel metabolism in Chlamydomonas through the lens of genomics.	Curr Opin Plant Biol	2007
17103184	Evidence for a microRNA expansion in the bilaterian ancestor.	Dev Genes Evol	2007
17932292	The Chlamydomonas genome reveals the evolution of key animal and plant functions.	Science	2007
17291820	Novel metabolism in Chlamydomonas through the lens of genomics.	Curr Opin Plant Biol	2007
17392514	Novel sfi1 alleles uncover additional functions for Sfi1p in bipolar spindle assembly and function.	Mol Biol Cell	2007
16518452	Large-scale trends in the evolution of gene structures within 11 animal genomes.	PLoS Comput Biol	2006
16518452	Large-scale trends in the evolution of gene structures within 11 animal genomes.	PLoS Comput Biol	2006
12537570	An integrated computational pipeline and database to support whole-genome sequence annotation.	Genome Biol	2002
12537572	Annotation of the Drosophila melanogaster euchromatic genome: a systematic review.	Genome Biol	2002

1 - 50 of 58

Artem S Kasianov

Institute for Information Transmission Problems of the Russian Academy of Sciences

Career Start Year 2011

Number of shared co-authors 1

Salvador Capella-Gutierrez

Spanish National Bioinformatics Institute (INB/ELIXIR-ES)

Career Start Year 2009

Number of shared co-authors 5

Liangsheng Zhang

College of Agriculture and Biotechnology, Zhejiang University

Career Start Year 2009

Number of shared co-authors 2

Anne-Ruxandra Carvunis

University of Pittsburgh School of Medicine.

Career Start Year 2007

Number of shared co-authors 0

Mohd Noor Mat Isa

Malaysia Genome and Vaccine Institute, National Institute of Biotechnology Malaysia

Career Start Year 2007

Number of shared co-authors 0

Haibao Tang

Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University

Career Start Year 2005

Number of shared co-authors 12

Francesc L??pez-Gir??ldez

Yale Center for Genomic Analysis

Career Start Year 2005

Number of shared co-authors 1

Intikhab Alam

College of Life Sciences

Career Start Year 2004

Number of shared co-authors 1

Brad A Chapman

Harvard T.H. Chan School of Public Health

Career Start Year 2003

Number of shared co-authors 1

Toni Gabald??n

Catalan Institution for Research and Advanced Studies

Career Start Year 2003

Number of shared co-authors 4

Fran??oise Thibaud-Nissen

National Center for Biotechnology Information, National Institutes of Health

Career Start Year 2003

Number of shared co-authors 6

Tyler Alioto

Universitat de Barcelona (UB)

Career Start Year 2001

Number of shared co-authors 3

Daniel J Richter

Institut de Biologia Evolutiva (CSIC-Universitat Pompeu Fabra)

Career Start Year 2001

Number of shared co-authors 1

Jun Yu

Beijing Institute of Genomics, Chinese Academy of Sciences

Career Start Year 2001

Number of shared co-authors 2

Josep F Abril

University of Barcelona

Career Start Year 2000

Number of shared co-authors 25

Karen Moore

University of Exeter

Career Start Year 2000

Number of shared co-authors 0

Kim Rutherford

University of Cambridge

Career Start Year 2000

Number of shared co-authors 7

C Titus Brown

University of California davis

Career Start Year 1999

Number of shared co-authors 3

Berend Snel

Utrecht University

Career Start Year 1998

Number of shared co-authors 0

Douglas B Rusch

Center for Genomics and Bioinformatics, Indiana University

Career Start Year 1998

Number of shared co-authors 12

Nansheng Chen

Institute of Oceanology, Chinese Academy of Sciences (IOCAS)

Career Start Year 1996

Number of shared co-authors 2

Terry Gaasterland

Scripps Institution of Oceanography, University of California San Diego

Career Start Year 1994

Number of shared co-authors 7

Sandra W Clifton

Garvan Institute of Medical Research

Career Start Year 1994

Number of shared co-authors 17

Martijn A Huynen

Radboud University Medical Centre Nijmegen

Career Start Year 1992

Number of shared co-authors 2

Kevin L Childs

Center for Genomics-Enabled Plant Science, Michigan State University

Career Start Year 1991

Number of shared co-authors 3

Arcady Mushegian

National Science Foundation

Career Start Year 1991

Number of shared co-authors 2

Muh-Ching Yee

Stanford University

Career Start Year 1988

Number of shared co-authors 1

Brian J Haas

Broad Institute of MIT and Harvard

Career Start Year 1981

Number of shared co-authors 13

Peter J A Cock

James Hutton Institute

Career Start Year 1974

Number of shared co-authors 2

John M Logsdon

University of Iowa

Career Start Year 1971

Number of shared co-authors 4

row(s) 1 - 30 of 30

Shengqiang Shu

US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory

Co-authored papers 8

Suzanna E Lewis

Lawrence Berkeley National Laboratory

Co-authored papers 4

Joshua S Kaminker

Genentech Inc.

Co-authored papers 4

Gerald M Rubin

The University of Florida

Co-authored papers 4

Christopher J Mungall

International Society for Biocuration, Lawrence Berkeley National Laboratory, University of Edinburgh, University of Edinburgh School of Biological Sciences

Co-authored papers 4

Jonathan L Tupy

Lawrence Berkeley National Laboratory

Co-authored papers 3

Nomi L Harris

Lawrence Berkely National Laboratory, Massachusetts Institute of Technology, Princeton University

Co-authored papers 3

Sima Misra

University of California berkeley

Co-authored papers 3

Chris Tyler-Smith

Wellcome Sanger Institute