Author details

Full Name

Cydney B Nielsen

Affiliation

ORCID

Career Start Year

2002

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
29754820	Interfaces of Malignant and Immunologic Clonal Dynamics in Ovarian Cancer.	Cell	2018
28557980	E-scape: interactive visualization of single-cell phylogenetics and cancer evolution.	Nat Methods	2017
27959929	Histological Transformation and Progression in Follicular Lymphoma: A Clonal Evolution Study.	PLoS Med	2016
27183439	Clonal genotype and population structure inference from single-cell tumor sequencing.	Nat Methods	2016
27378294	ChAsE: chromatin analysis and exploration tool.	Bioinformatics	2016
27182968	Divergent modes of clonal spread and intraperitoneal mixing in high-grade serous ovarian cancer.	Nat Genet	2016
26739384	Visualization: A Mind-Machine Interface for Discovery.	Trends in Genetics	2016
26330192	Highlights from the 5th Symposium on Biological Data Visualization: Part 1.	BMC Bioinformatics	2015
25470049	Dynamics of genomic clones in breast cancer patient xenografts at single-cell resolution.	Nature	2015
26361497	Highlights from the 5th Symposium on Biological Data Visualization: Part 2.	BMC Proceedings	2015
26182300	Hereditary Diffuse Gastric Cancer Syndrome: CDH1 Mutations and Beyond.	JAMA Oncol	2015
24051821	Variant view: visualizing sequence variants in their gene context.		2013
22874978	Points of view: Managing deep data in genome browsers.	Nature Methods	2012
22803197	Points of view: Representing the genome.	Nature Methods	2012
22930825	Points of view: Representing genomic structural variation.	Nature Methods	2012
22960372	Spark: a navigational paradigm for genomic data exploration.	Genome Res	2012
22127213	The Human Epigenome Browser at Washington University.	Nat Methods	2011
21258322	Genome-wide identification of Ago2 binding sites from mouse embryonic stem cells with and without mature microRNAs.	Nature Structural and Molecular Biology	2011
20195254	Visualizing biological data-now and in the future.	Nat Methods	2010
20613842	Conserved role of intragenic DNA methylation in regulating alternative promoters.	Nature	2010
20195257	Visualizing genomes: techniques and challenges.	Nat Methods	2010
19854133	Biased chromatin signatures around polyadenylation sites and exons.	Mol Cell	2009
19528083	De novo transcriptome assembly with ABySS.	Bioinformatics	2009
19834150	ABySS-Explorer: visualizing genome sequence assemblies.	IEEE Trans Vis Comput Graph	2009
17872505	Determinants of targeting by endogenous and exogenous microRNAs and siRNAs.	RNA	2007
15562318	Patterns of intron gain and loss in fungi.	PLoS Biol	2004
12712197	The genome sequence of the filamentous fungus Neurospora crassa.	Nature	2003
12507483	DNA polymerase gene sequences indicate western and forest tent caterpillar viruses form a new taxonomic group within baculoviruses.	Journal of Invertebrate Pathology	2002