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Author Details

Joshua M Akey
Princeton University
1997
126
59
Nathan Sheffield (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36167050The contribution of Neanderthal introgression to modern human traits.Curr Biol2022
35809046Evolution of Human-Specific Alleles Protecting Cognitive Function of Grandmothers.Mol Biol Evol2022
34155038Deep sequencing of 1320 genes reveals the landscape of protein-truncating variants and their contribution to psoriasis in 19,973 Chinese individuals.Genome Res2021
32892943Editorial overview: Evolutionary genomics - from molecular mechanisms to phenotypes to populations.Curr Opin Genet Dev2020
32004458Identifying and Interpreting Apparent Neanderthal Ancestry in African Individuals.Cell2020
32584807Implications of localized charge for human influenza A H1N1 hemagglutinin evolution: Insights from deep mutational scans.PLoS Comput Biol2020
31248437The long walk to African genomics.Genome Biol2019
29551270Analysis of Human Sequence Data Reveals Two Pulses of Archaic Denisovan Admixture.Cell2018
29970452Massive variation of short tandem repeats with functional consequences across strains of <i>Arabidopsis thaliana</i>.Genome Res2018
30072539Evolutionary history and adaptation of a human pygmy population of Flores Island, Indonesia.Science2018
29852022Outstanding questions in the study of archaic hominin admixture.PLoS Genet2018
29669733Evolution of DNAase I Hypersensitive Sites in MHC Regulatory Regions of Primates.Genetics2018
27859906Human RECQ Helicase Pathogenic Variants, Population Variation and "Missing" Diseases.Hum Mutat2017
28102248Tracing the peopling of the world through genomics.Nature2017
28235201Impacts of Neanderthal-Introgressed Sequences on the Landscape of Human Gene Expression.Cell2017
28760139Selection plays the hand it was dealt: evidence that human adaptation commonly targets standing genetic variation.Genome Biol2017
26787891Patterns of deleterious variation between human populations reveal an unbalanced load.Proc Natl Acad Sci U S A2016
27733547Positive selection of the TRIM family regulatory region in primate genomes.Proc Biol Sci2016
27729424Detecting Sources of Transcriptional Heterogeneity in Large-Scale RNA-Seq Data Sets.Genetics2016
27839976Archaic Hominin Admixture Facilitated Adaptation to Out-of-Africa Environments.Curr Biol2016
27725671A continuum of admixture in the Western Hemisphere revealed by the African Diaspora genome.Nat Commun2016
27654916Population genetics: A map of human wanderlust.Nature2016
27889118Editorial overview: Genetics of human origin: New horizons in human population genetics.Curr Opin Genet Dev2016
27745837Robust Inference of Identity by Descent from Exome-Sequencing Data.Am J Hum Genet2016
27197222A flexible method for estimating the fraction of fitness influencing mutations from large sequencing data sets.Genome Res2016
27345162Human Diversity in a Cell Surface Receptor that Inhibits Autophagy.Curr Biol2016
27487209Emergence of a Homo sapiens-specific gene family and chromosome 16p11.2 CNV susceptibility.Nature2016
26912863The phenotypic legacy of admixture between modern humans and Neandertals.Science2016
26989198Excavating Neandertal and Denisovan DNA from the genomes of Melanesian individuals.Science2016
25415970Rare variation facilitates inferences of fine-scale population structure in humans.Mol Biol Evol2015
26404824The origins, determinants, and consequences of human mutations.Science2015
26451479Small Amounts of Archaic Admixture Provide Big Insights into Human History.Cell2015
26553329Methods and models for unravelling human evolutionary history.Nat Rev Genet2015
26104583Comprehensive identification and analysis of human accelerated regulatory DNA.Genome Res2015
25683119Complex history of admixture between modern humans and Neandertals.Am J Hum Genet2015
25620206Estimates of continental ancestry vary widely among individuals with the same mtDNA haplogroup.Am J Hum Genet2015
24476670Resurrecting surviving Neandertal lineages from modern human genomes.Science2014
25258386Heritable variation of mRNA decay rates in yeast.Genome Res2014
25279984Characteristics of neutral and deleterious protein-coding variation among individuals and populations.Am J Hum Genet2014
25247359Human evolution: genomic gifts from archaic hominins.Curr Biol2014
24992477Evolution and genetic architecture of chromatin accessibility and function in yeast.PLoS Genet2014
25104853Global and disease-associated genetic variation in the human Fanconi anemia gene family.Hum Mol Genet2014
23201682Analysis of 6,515 exomes reveals the recent origin of most human protein-coding variants.Nature2013
27896059Signatures of natural selection on genetic variants affecting complex human traits.Appl Transl Genom2013
24287334Genetic architecture of quantitative traits and complex diseases.Curr Opin Genet Dev2013
24337295Exonic transcription factor binding directs codon choice and affects protein evolution.Science2013
23861739Fine-scale patterns of population stratification confound rare variant association tests.PLoS One2013
23823723Great ape genetic diversity and population history.Nature2013
23848512Exploring signatures of positive selection in pigmentation candidate genes in populations of East Asian ancestry.BMC Evol Biol2013
23834317Selection and adaptation in the human genome.Annu Rev Genomics Hum Genet2013
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Collaborators

Li Jin
Fudan University
Co-authored papers 15
Benjamin Vernot
Max Planck Institute for Evolutionary Anthropology
Co-authored papers 14
Michael J Bamshad
University of Washington
Co-authored papers 9
Evan E Eichler
University of Washington
Co-authored papers 7
Esteban J Parra
Co-authored papers 7
Deborah A Nickerson
University of Washington
Co-authored papers 7
Mark J Rieder
Co-authored papers 5
Leonid Kruglyak
Co-authored papers 5
Andrew B Stergachis
University of Washington School of Medicine
Co-authored papers 5
John A Stamatoyannopoulos
Altius Institute for Biomedical Sciences
Co-authored papers 5
Suzanne M Leal
Center for Statistical Genetics, Columbia University Medical Center
Co-authored papers 4
Eric Haugen
Altius Institute for Biomedical Sciences
Co-authored papers 4
Alex P Reynolds
Altius Institute for Biomedical Sciences
Co-authored papers 4
Shane Neph
Altius Institute for Biomedical Sciences
Co-authored papers 4
Jay Shendure
University of Washington
Co-authored papers 4
Ranjan Deka
Co-authored papers 4
Laura B Scheinfeldt
Coriell Institute for Medical Research
Co-authored papers 4
Robert E Thurman
University of Washington
Co-authored papers 4
Carl Baker
University of Washington School of Medicine
Co-authored papers 4
Carlos D Bustamante
Stanford University
Co-authored papers 3
Emily H Turner
Co-authored papers 3
Richard Sandstrom
Altius Institute for Biomedical Sciences
Co-authored papers 3
Michael A Eberle
Illumina Inc.
Co-authored papers 3
Christopher S Carlson
University of Washington
Co-authored papers 3
Joshua D Smith
University of Washington
Co-authored papers 3
Matthew T Maurano
Institute for Systems Genetics, NYU School of Medicine
Co-authored papers 3
Jeff Vierstra
Altius Institute for Biomedical Sciences
Co-authored papers 3
Richard Humbert
University of Washington
Co-authored papers 3
Kathleen C Barnes
Co-authored papers 3
Theresa K Canfield
University of Washington
Co-authored papers 2
Release 1.2