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Author Details

Bernd Bodenmiller
University of Zurich
2005
95
49
Emma Lundberg (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36609566A comprehensive single-cell map of T cell exhaustion-associated immune environments in human breast cancer.Nat Commun2023
37816904An end-to-end workflow for multiplexed image processing and analysis.Nat Protoc2023
37653120Multielement Z-tag imaging by X-ray fluorescence microscopy for next-generation multiplex imaging.Nat Methods2023
37653118DNA-barcoded signal amplification for imaging mass cytometry enables sensitive and highly multiplexed tissue imaging.Nat Methods2023
37620318Acquired resistance to anti-PD1 therapy in patients with NSCLC associates with immunosuppressive T cell phenotype.Nat Commun2023
36585456Optimizing multiplexed imaging experimental design through tissue spatial segregation estimation.Nat Methods2023
37463917Cancer-associated fibroblast classification in single-cell and spatial proteomics data.Nat Commun2023
36609566A comprehensive single-cell map of T cell exhaustion-associated immune environments in human breast cancer.Nat Commun2023
36921599Multiplex imaging of breast cancer lymph node metastases identifies prognostic single-cell populations independent of clinical classifiers.Cell Rep Med2023
37292939<i>cytoviewer:</i> an R/Bioconductor package for interactive visualization and exploration of highly multiplexed imaging data.bioRxiv2023
36721022Author Correction: A shared disease-associated oligodendrocyte signature among multiple CNS pathologies.Nat Neurosci2023
37620318Acquired resistance to anti-PD1 therapy in patients with NSCLC associates with immunosuppressive T cell phenotype.Nat Commun2023
37653120Multielement Z-tag imaging by X-ray fluorescence microscopy for next-generation multiplex imaging.Nat Methods2023
37653118DNA-barcoded signal amplification for imaging mass cytometry enables sensitive and highly multiplexed tissue imaging.Nat Methods2023
37816904An end-to-end workflow for multiplexed image processing and analysis.Nat Protoc2023
37463917Cancer-associated fibroblast classification in single-cell and spatial proteomics data.Nat Commun2023
37292939<i>cytoviewer:</i> an R/Bioconductor package for interactive visualization and exploration of highly multiplexed imaging data.bioRxiv2023
36921599Multiplex imaging of breast cancer lymph node metastases identifies prognostic single-cell populations independent of clinical classifiers.Cell Rep Med2023
36721022Author Correction: A shared disease-associated oligodendrocyte signature among multiple CNS pathologies.Nat Neurosci2023
36585456Optimizing multiplexed imaging experimental design through tissue spatial segregation estimation.Nat Methods2023
34157151Cutaneous and systemic hyperinflammation drives maculopapular drug exanthema in severely ill COVID-19 patients.Allergy2022
36228153Vaccination with Designed Neopeptides Induces Intratumoral, Cross-reactive CD4+ T-cell Responses in Glioblastoma.Clin Cancer Res2022
35760863A shared disease-associated oligodendrocyte signature among multiple CNS pathologies.Nat Neurosci2022
35880127scQUEST: Quantifying tumor ecosystem heterogeneity from mass or flow cytometry data.STAR Protoc2022
35567391T-cell recovery and evidence of persistent immune activation 12â¿¿months after severe COVID-19.Allergy2022
35437329Breast tumor microenvironment structures are associated with genomic features and clinical outcome.Nat Genet2022
35492239Single-cell proteomics defines the cellular heterogeneity of localized prostate cancer.Cell Rep Med2022
35363540Multiplexed imaging mass cytometry of the chemokine milieus in melanoma characterizes features of the response to immunotherapy.Sci Immunol2022
34157151Cutaneous and systemic hyperinflammation drives maculopapular drug exanthema in severely ill COVID-19 patients.Allergy2022
35437329Breast tumor microenvironment structures are associated with genomic features and clinical outcome.Nat Genet2022
35760863A shared disease-associated oligodendrocyte signature among multiple CNS pathologies.Nat Neurosci2022
35492239Single-cell proteomics defines the cellular heterogeneity of localized prostate cancer.Cell Rep Med2022
35363540Multiplexed imaging mass cytometry of the chemokine milieus in melanoma characterizes features of the response to immunotherapy.Sci Immunol2022
35567391T-cell recovery and evidence of persistent immune activation 12â¿¿months after severe COVID-19.Allergy2022
36228153Vaccination with Designed Neopeptides Induces Intratumoral, Cross-reactive CD4+ T-cell Responses in Glioblastoma.Clin Cancer Res2022
35880127scQUEST: Quantifying tumor ecosystem heterogeneity from mass or flow cytometry data.STAR Protoc2022
33482122The Tumor Profiler Study: integrated, multi-omic, functional tumor profiling for clinical decision support.Cancer Cell2021
33482122The Tumor Profiler Study: integrated, multi-omic, functional tumor profiling for clinical decision support.Cancer Cell2021
33884644Profound dysregulation of T cell homeostasis and function in patients with severe COVID-19.Allergy2021
34035041Monogenic Diabetes and Integrated Stress Response Genes Display Altered Gene Expression in Type 1 Diabetes.Diabetes2021
33932331Deciphering the signaling network of breast cancer improves drug sensitivity prediction.Cell Syst2021
33367748cytomapper: an R/Bioconductor package for visualization of highly multiplexed imaging data.Bioinformatics2021
34661974Cell-to-cell and type-to-type heterogeneity of signaling networks: insights from the crowd.Mol Syst Biol2021
34423310Multi-omics reveals clinically relevant proliferative drive associated with mTOR-MYC-OXPHOS activity in chronic lymphocytic leukemia.Nat Cancer2021
33932331Deciphering the signaling network of breast cancer improves drug sensitivity prediction.Cell Syst2021
33884644Profound dysregulation of T cell homeostasis and function in patients with severe COVID-19.Allergy2021
34661974Cell-to-cell and type-to-type heterogeneity of signaling networks: insights from the crowd.Mol Syst Biol2021
34423310Multi-omics reveals clinically relevant proliferative drive associated with mTOR-MYC-OXPHOS activity in chronic lymphocytic leukemia.Nat Cancer2021
34035041Monogenic Diabetes and Integrated Stress Response Genes Display Altered Gene Expression in Type 1 Diabetes.Diabetes2021
33367748cytomapper: an R/Bioconductor package for visualization of highly multiplexed imaging data.Bioinformatics2021
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Collaborators

Ruedi Aebersold
Institute of Molecular Systems Biology, ETH Zurich
Co-authored papers 27
Andrea Jacobs
University of Zurich
Co-authored papers 10
Hartland W Jackson
Lunenfeld-Tanenbaum Research Institute
Co-authored papers 8
Holger Moch
University Hospital Zurich
Co-authored papers 7
Lukas N Mueller
Co-authored papers 7
Garry P Nolan
Stanford University School of Medicine
Co-authored papers 6
Paola Picotti
Institute of Molecular Systems Biology, ETH Zurich
Co-authored papers 5
David S Campbell
Co-authored papers 5
Dana Pe'er
Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center
Co-authored papers 4
Bruno Domon
Co-authored papers 4
Markus Müller
Co-authored papers 3
Clive Wasserfall
Co-authored papers 3
Alexey I Nesvizhskii
University of Michigan ann arbor
Co-authored papers 3
Olga Vitek
Khoury College of Computer Sciences, Northeastern University
Co-authored papers 3
Alexander Schmidt
Co-authored papers 3
Julio Saez-Rodriguez
Institute of Computational Biomedicine, Heidelberg University
Co-authored papers 3
Mitchell P Levesque
University Hospital Zurich
Co-authored papers 3
Mar??a Rodr??guez Mart??nez
Herbert Irving Cancer Research Center, Columbia University Medical Center
Co-authored papers 3
Patrick G A Pedrioli
Institute of Translational Medicine, Swiss Federal Institute of Technology/ETH Zurich
Co-authored papers 3
Ido Amit
Weizmann Institute of Science
Co-authored papers 3
Mi-Youn Brusniak
Co-authored papers 3
Oliver Stegle
Wellcome Sanger Institute
Co-authored papers 2
Jimmy K Eng
University of Washington
Co-authored papers 2
Kevan M Shokat
University of California San Francisco
Co-authored papers 2
Bernd Wollscheid
ETH Zurich
Co-authored papers 2
Oscar M Rueda
University of Cambridge
Co-authored papers 2
Carlos Caldas
Cancer Research UK Cambridge Institute, University of Cambridge
Co-authored papers 2
Lucas Pelkmans
University of Zurich
Co-authored papers 2
Rune Linding
Humboldt-Universitat zu Berlin
Co-authored papers 2
Philip C Andrews
Sydney Children's Hospital, University of New South Wales
Co-authored papers 2
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